GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions

Li Y, Rosso MG, Viehöver P, Weisshaar B (2007)
Nucleic Acids Research 35(Database): D874-D878.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
OA
Autor*in
Li, Yong; Rosso, Mario G.; Viehöver, PriscaUniBi; Weisshaar, BerndUniBi
Erscheinungsjahr
2007
Zeitschriftentitel
Nucleic Acids Research
Band
35
Ausgabe
Database
Seite(n)
D874-D878
ISSN
0305-1048
eISSN
1362-4962
Page URI
https://pub.uni-bielefeld.de/record/1596131

Zitieren

Li Y, Rosso MG, Viehöver P, Weisshaar B. GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. Nucleic Acids Research. 2007;35(Database):D874-D878.
Li, Y., Rosso, M. G., Viehöver, P., & Weisshaar, B. (2007). GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. Nucleic Acids Research, 35(Database), D874-D878. https://doi.org/10.1093/nar/gkl753
Li, Yong, Rosso, Mario G., Viehöver, Prisca, and Weisshaar, Bernd. 2007. “GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions”. Nucleic Acids Research 35 (Database): D874-D878.
Li, Y., Rosso, M. G., Viehöver, P., and Weisshaar, B. (2007). GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. Nucleic Acids Research 35, D874-D878.
Li, Y., et al., 2007. GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. Nucleic Acids Research, 35(Database), p D874-D878.
Y. Li, et al., “GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions”, Nucleic Acids Research, vol. 35, 2007, pp. D874-D878.
Li, Y., Rosso, M.G., Viehöver, P., Weisshaar, B.: GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. Nucleic Acids Research. 35, D874-D878 (2007).
Li, Yong, Rosso, Mario G., Viehöver, Prisca, and Weisshaar, Bernd. “GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions”. Nucleic Acids Research 35.Database (2007): D874-D878.
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Copyright Statement:
Dieses Objekt ist durch das Urheberrecht und/oder verwandte Schutzrechte geschützt. [...]
Volltext(e)
Access Level
OA Open Access
Zuletzt Hochgeladen
2019-09-06T08:48:02Z
MD5 Prüfsumme
81bbd4df96d2c64051958e11c99c20eb


35 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

A Network-Guided Genetic Approach to Identify Novel Regulators of Adventitious Root Formation in Arabidopsis thaliana.
Ibáñez S, Ruiz-Cano H, Fernández MÁ, Sánchez-García AB, Villanova J, Micol JL, Pérez-Pérez JM., Front Plant Sci 10(), 2019
PMID: 31057574
A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis.
Duan CG, Wang X, Zhang L, Xiong X, Zhang Z, Tang K, Pan L, Hsu CC, Xu H, Tao WA, Zhang H, Zhu JK., Proc Natl Acad Sci U S A 114(35), 2017
PMID: 28808009
Agrobacterium-mediated plant transformation: biology and applications.
Hwang HH, Yu M, Lai EM., Arabidopsis Book 15(), 2017
PMID: 31068763
An Indexed, Mapped Mutant Library Enables Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii.
Li X, Zhang R, Patena W, Gang SS, Blum SR, Ivanova N, Yue R, Robertson JM, Lefebvre PA, Fitz-Gibbon ST, Grossman AR, Jonikas MC., Plant Cell 28(2), 2016
PMID: 26764374
GOLLUM [FeFe]-hydrogenase-like proteins are essential for plant development in normoxic conditions and modulate energy metabolism.
Mondy S, Lenglet A, Cosson V, Pelletier S, Pateyron S, Gilard F, Scholte M, Brocard L, Couzigou JM, Tcherkez G, Péan M, Ratet P., Plant Cell Environ 37(1), 2014
PMID: 23639116
Identification of a regulatory subunit of protein phosphatase 1 which mediates blue light signaling for stomatal opening.
Takemiya A, Yamauchi S, Yano T, Ariyoshi C, Shimazaki K., Plant Cell Physiol 54(1), 2013
PMID: 22585556
Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin.
Saze H, Kitayama J, Takashima K, Miura S, Harukawa Y, Ito T, Kakutani T., Nat Commun 4(), 2013
PMID: 23934508
Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family.
Pérez-Pérez JM, Esteve-Bruna D, González-Bayón R, Kangasjärvi S, Caldana C, Hannah MA, Willmitzer L, Ponce MR, Micol JL., Plant Physiol 162(2), 2013
PMID: 23596191
Poly(ADP-ribose)polymerases are involved in microhomology mediated back-up non-homologous end joining in Arabidopsis thaliana.
Jia Q, den Dulk-Ras A, Shen H, Hooykaas PJ, de Pater S., Plant Mol Biol 82(4-5), 2013
PMID: 23625359
Mediation of clathrin-dependent trafficking during cytokinesis and cell expansion by Arabidopsis stomatal cytokinesis defective proteins.
McMichael CM, Reynolds GD, Koch LM, Wang C, Jiang N, Nadeau J, Sack FD, Gelderman MB, Pan J, Bednarek SY., Plant Cell 25(10), 2013
PMID: 24179130
GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database.
Kleinboelting N, Huep G, Kloetgen A, Viehoever P, Weisshaar B., Nucleic Acids Res 40(database issue), 2012
PMID: 22080561
In the absence of BYPASS1-related gene function, the bps signal disrupts embryogenesis by an auxin-independent mechanism.
Lee DK, Van Norman JM, Murphy C, Adhikari E, Reed JW, Sieburth LE., Development 139(4), 2012
PMID: 22274700
RCD1-DREB2A interaction in leaf senescence and stress responses in Arabidopsis thaliana.
Vainonen JP, Jaspers P, Wrzaczek M, Lamminmäki A, Reddy RA, Vaahtera L, Brosché M, Kangasjärvi J., Biochem J 442(3), 2012
PMID: 22150398
Arabidopsis GCP3-interacting protein 1/MOZART 1 is an integral component of the γ-tubulin-containing microtubule nucleating complex.
Nakamura M, Yagi N, Kato T, Fujita S, Kawashima N, Ehrhardt DW, Hashimoto T., Plant J 71(2), 2012
PMID: 22404201
Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis.
Bourbousse C, Ahmed I, Roudier F, Zabulon G, Blondet E, Balzergue S, Colot V, Bowler C, Barneche F., PLoS Genet 8(7), 2012
PMID: 22829781
Impact of the absence of stem-specific β-glucosidases on lignin and monolignols.
Chapelle A, Morreel K, Vanholme R, Le-Bris P, Morin H, Lapierre C, Boerjan W, Jouanin L, Demont-Caulet N., Plant Physiol 160(3), 2012
PMID: 22984124
Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects.
Jones MA, Williams BA, McNicol J, Simpson CG, Brown JW, Harmer SL., Plant Cell 24(10), 2012
PMID: 23110899
Conserved CDC20 cell cycle functions are carried out by two of the five isoforms in Arabidopsis thaliana.
Kevei Z, Baloban M, Da Ines O, Tiricz H, Kroll A, Regulski K, Mergaert P, Kondorosi E., PLoS One 6(6), 2011
PMID: 21687678
A strategy for the identification of new abiotic stress determinants in Arabidopsis using web-based data mining and reverse genetics.
Azevedo H, Silva-Correia J, Oliveira J, Laranjeira S, Barbeta C, Amorim-Silva V, Botella MA, Lino-Neto T, Tavares RM., OMICS 15(12), 2011
PMID: 22136640
TIP5;1 is an aquaporin specifically targeted to pollen mitochondria and is probably involved in nitrogen remobilization in Arabidopsis thaliana.
Soto G, Fox R, Ayub N, Alleva K, Guaimas F, Erijman EJ, Mazzella A, Amodeo G, Muschietti J., Plant J 64(6), 2010
PMID: 21143683
GabiPD: the GABI primary database--a plant integrative 'omics' database.
Riaño-Pachón DM, Nagel A, Neigenfind J, Wagner R, Basekow R, Weber E, Mueller-Roeber B, Diehl S, Kersten B., Nucleic Acids Res 37(database issue), 2009
PMID: 18812395
Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis.
Peng ZY, Zhou X, Li L, Yu X, Li H, Jiang Z, Cao G, Bai M, Wang X, Jiang C, Lu H, Hou X, Qu L, Wang Z, Zuo J, Fu X, Su Z, Li S, Guo H., Nucleic Acids Res 37(database issue), 2009
PMID: 19015126
Phenome analysis in plant species using loss-of-function and gain-of-function mutants.
Kuromori T, Takahashi S, Kondou Y, Shinozaki K, Matsui M., Plant Cell Physiol 50(7), 2009
PMID: 19502383
An archived activation tagged population of Arabidopsis thaliana to facilitate forward genetics approaches.
Robinson SJ, Tang LH, Mooney BA, McKay SJ, Clarke WE, Links MG, Karcz S, Regan S, Wu YY, Gruber MY, Cui D, Yu M, Parkin IA., BMC Plant Biol 9(), 2009
PMID: 19646253
Control of cell proliferation, organ growth, and DNA damage response operate independently of dephosphorylation of the Arabidopsis Cdk1 homolog CDKA;1.
Dissmeyer N, Weimer AK, Pusch S, De Schutter K, Alvim Kamei CL, Nowack MK, Novak B, Duan GL, Zhu YG, De Veylder L, Schnittger A., Plant Cell 21(11), 2009
PMID: 19948791
The first zygotic division in Arabidopsis requires de novo transcription of thymidylate kinase.
Ronceret A, Gadea-Vacas J, Guilleminot J, Lincker F, Delorme V, Lahmy S, Pelletier G, Chabouté ME, Devic M., Plant J 53(5), 2008
PMID: 18036198
The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis.
Schwarz S, Grande AV, Bujdoso N, Saedler H, Huijser P., Plant Mol Biol 67(1-2), 2008
PMID: 18278578
The effects of the loss of TIP1;1 and TIP1;2 aquaporins in Arabidopsis thaliana.
Schüssler MD, Alexandersson E, Bienert GP, Bienert GP, Kichey T, Laursen KH, Johanson U, Kjellbom P, Schjoerring JK, Jahn TP., Plant J 56(5), 2008
PMID: 18643996
Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis.
Deveaux Y, Toffano-Nioche C, Claisse G, Thareau V, Morin H, Laufs P, Moreau H, Kreis M, Lecharny A., BMC Evol Biol 8(), 2008
PMID: 18950478
Web-based Arabidopsis functional and structural genomics resources.
Lu Y, Last RL., Arabidopsis Book 6(), 2008
PMID: 22303243
Genome-wide analysis of T-DNA integration into the chromosomes of Magnaporthe oryzae.
Choi J, Park J, Jeon J, Chi MH, Goh J, Yoo SY, Park J, Jung K, Kim H, Park SY, Rho HS, Kim S, Kim BR, Han SS, Kang S, Lee YH., Mol Microbiol 66(2), 2007
PMID: 17850257

23 References

Daten bereitgestellt von Europe PubMed Central.

Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
Wisman E, Hartmann U, Sagasser M, Baumann E, Palme K, Hahlbrock K, Saedler H, Weisshaar B., Proc. Natl. Acad. Sci. U.S.A. 95(21), 1998
PMID: 9770503
T-DNA as an insertional mutagen in Arabidopsis.
Krysan PJ, Young JC, Sussman MR., Plant Cell 11(12), 1999
PMID: 10590158
The Arabidopsis knockout facility at the University of Wisconsin-Madison.
Sussman MR, Amasino RM, Young JC, Krysan PJ, Austin-Phillips S., Plant Physiol. 124(4), 2000
PMID: 11115860
FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants.
Samson F, Brunaud V, Balzergue S, Dubreucq B, Lepiniec L, Pelletier G, Caboche M, Lecharny A., Nucleic Acids Res. 30(1), 2002
PMID: 11752264
A high-throughput Arabidopsis reverse genetics system.
Sessions A, Burke E, Presting G, Aux G, McElver J, Patton D, Dietrich B, Ho P, Bacwaden J, Ko C, Clarke JD, Cotton D, Bullis D, Snell J, Miguel T, Hutchison D, Kimmerly B, Mitzel T, Katagiri F, Glazebrook J, Law M, Goff SA., Plant Cell 14(12), 2002
PMID: 12468722
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community.
Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, Miller N, Mueller LA, Mundodi S, Reiser L, Tacklind J, Weems DC, Wu Y, Xu I, Yoo D, Yoon J, Zhang P., Nucleic Acids Res. 31(1), 2003
PMID: 12519987
ATIDB: Arabidopsis thaliana insertion database.
Pan X, Liu H, Clarke J, Jones J, Bevan M, Stein L., Nucleic Acids Res. 31(4), 2003
PMID: 12582244
Annotation of the Arabidopsis genome.
Wortman JR, Haas BJ, Hannick LI, Smith RK Jr, Maiti R, Ronning CM, Chan AP, Yu C, Ayele M, Whitelaw CA, White OR, Town CD., Plant Physiol. 132(2), 2003
PMID: 12805579
Genome-wide insertional mutagenesis of Arabidopsis thaliana.
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, Parker H, Prednis L, Ansari Y, Choy N, Deen H, Geralt M, Hazari N, Hom E, Karnes M, Mulholland C, Ndubaku R, Schmidt I, Guzman P, Aguilar-Henonin L, Schmid M, Weigel D, Carter DE, Marchand T, Risseeuw E, Brogden D, Zeko A, Crosby WL, Berry CC, Ecker JR., Science 301(5633), 2003
PMID: 12893945
FLAGdb++: a database for the functional analysis of the Arabidopsis genome.
Samson F, Brunaud V, Duchene S, De Oliveira Y, Caboche M, Lecharny A, Aubourg S., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681431
MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics.
Schoof H, Ernst R, Nazarov V, Pfeifer L, Mewes HW, Mayer KF., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681437
High-throughput generation of sequence indexes from T-DNA mutagenized Arabidopsis thaliana lines.
Strizhov N, Li Y, Rosso MG, Viehoever P, Dekker KA, Weisshaar B., BioTechniques 35(6), 2003
PMID: 14682050
An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics.
Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B., Plant Mol. Biol. 53(1-2), 2003
PMID: 14756321
A collection of 11 800 single-copy Ds transposon insertion lines in Arabidopsis.
Kuromori T, Hirayama T, Kiyosue Y, Takabe H, Mizukado S, Sakurai T, Akiyama K, Kamiya A, Ito T, Shinozaki K., Plant J. 37(6), 2004
PMID: 14996221
Control of male gametophyte development.
McCormick S., Plant Cell 16 Suppl(), 2004
PMID: 15037731
Female gametophyte development.
Yadegari R, Drews GN., Plant Cell 16 Suppl(), 2004
PMID: 15075395
T-DNA insertion mutagenesis in Arabidopsis: going back and forth.
Azpiroz-Leehan R, Feldmann KA., Trends Genet. 13(4), 1997
PMID: 9097726
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
Multiple independent defective suppressor-mutator transposon insertions in Arabidopsis: a tool for functional genomics.
Tissier AF, Marillonnet S, Klimyuk V, Patel K, Torres MA, Murphy G, Jones JD., Plant Cell 11(10), 1999
PMID: 10521516
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 17062622
PubMed | Europe PMC

Suchen in

Google Scholar