BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, et al. (2005)
Bioinformatics 21(7): 853-859.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
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Autor*in
Bartels, Daniela;
Kespohl, Sebastian;
Albaum, StefanUniBi 
;
Drüke, Tanja;
Goesmann, AlexanderUniBi ;
Herold, JuliaUniBi;
Kaiser, Olaf;
Pühler, AlfredUniBi ;
Pfeiffer, Friedhelm;
Raddatz, Günter;
Stoye, JensUniBi ;
Meyer, Folker
Alle
;
Drüke, Tanja;
Goesmann, AlexanderUniBi ;
Herold, JuliaUniBi;
Kaiser, Olaf;
Pühler, AlfredUniBi ;
Pfeiffer, Friedhelm;
Raddatz, Günter;
Stoye, JensUniBi ;
Meyer, Folker
Alle
Einrichtung
Fakultät für Biologie
Centrum für Biotechnologie > Institut für Bioinformatik
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Arbeitsgruppe J. Stoye
Centrum für Biotechnologie > Institut für Bioinformatik
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Arbeitsgruppe J. Stoye
Abstract / Bemerkung
Summary: We provide the graphical tool BACCardI for the construction of virtual clone maps from standard assembler output files or BLAST based sequence comparisons. This new tool has been applied to numerous genome projects to solve various problems including (a) validation of whole genome shotgun assemblies, (b) support for contig ordering in the finishing phase of a genome project, and (c) intergenome comparison between related strains when only one of the strains has been sequenced and a large insert library is available for the other. The BACCardI software can seamlessly interact with various sequence assembly packages. Motivation: Genomic assemblies generated from sequence information need to be validated by independent methods such as physical maps. The time-consuming task of building physical maps can be circumvented by virtual clone maps derived from read pair information of large insert libraries.
Erscheinungsjahr
2005
Zeitschriftentitel
Bioinformatics
Band
21
Ausgabe
7
Seite(n)
853-859
ISSN
1367-4803
eISSN
1460-2059
Page URI
https://pub.uni-bielefeld.de/record/1773302
Zitieren
Bartels D, Kespohl S, Albaum S, et al. BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics. 2005;21(7):853-859.
Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., et al. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics, 21(7), 853-859. https://doi.org/10.1093/bioinformatics/bti091
Bartels, Daniela, Kespohl, Sebastian, Albaum, Stefan, Drüke, Tanja, Goesmann, Alexander, Herold, Julia, Kaiser, Olaf, et al. 2005. “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”. Bioinformatics 21 (7): 853-859.
Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., et al. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21, 853-859.
Bartels, D., et al., 2005. BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics, 21(7), p 853-859.
D. Bartels, et al., “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”, Bioinformatics, vol. 21, 2005, pp. 853-859.
Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., Stoye, J., Meyer, F., Schuster, S.C.: BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics. 21, 853-859 (2005).
Bartels, Daniela, Kespohl, Sebastian, Albaum, Stefan, Drüke, Tanja, Goesmann, Alexander, Herold, Julia, Kaiser, Olaf, Pühler, Alfred, Pfeiffer, Friedhelm, Raddatz, Günter, Stoye, Jens, Meyer, Folker, and Schuster, Stephan C. “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”. Bioinformatics 21.7 (2005): 853-859.
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