RNAhybrid: microRNA target prediction easy, fast and flexible

Krüger, Jan; Rehmsmeier, Marc

RNAhybrid: microRNA target prediction easy, fast and flexible

Krüger J, Rehmsmeier M (2006)
Nucleic Acids Research 34(Web Server): W451-W454.

Zeitschriftenaufsatz | Veröffentlicht | Englisch

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W451.pdf

DOI

https://doi.org/10.1093/nar/gkl243

URN

urn:nbn:de:0070-pub-17738782

Autor*in

Krüger, Jan^UniBi; Rehmsmeier, Marc^UniBi

Einrichtung

Centrum für Biotechnologie

Abstract / Bemerkung

In the elucidation of the microRNA regulatory network, knowledge of potential targets is of highest importance. Among existing target prediction methods, RNAhybrid [ M. Rehmsmeier, P. Steffen, M. Hochsmann and R. Giegerich ( 2004) RNA, 10, 1507 - 1517] is unique in offering a flexible online prediction. Recently, some useful features have been added, among these the possibility to disallow G: U base pairs in the seed region, and a seed- match speed- up, which accelerates the program by a factor of 8. In addition, the program can now be used as a webservice for remote calls from user-implemented programs. We demonstrate RNAhybrid's flexibility with the prediction of a non- canonical target site for Caenorhabditis elegans miR- 241 in the 30- untranslated region of lin-39. RNAhybrid is available at http://bibiserv.techfak.uni-bielefeld.de/rnahybrid.

Erscheinungsjahr

2006

Zeitschriftentitel

Nucleic Acids Research

Band

Ausgabe

Web Server

Seite(n)

W451-W454

ISSN

0305-1048

eISSN

1362-4962

Page URI

https://pub.uni-bielefeld.de/record/1773878

Zitieren

Krüger J, Rehmsmeier M. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research. 2006;34(Web Server):W451-W454.

Krüger, J., & Rehmsmeier, M. (2006). RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research, 34(Web Server), W451-W454. https://doi.org/10.1093/nar/gkl243

Krüger, Jan, and Rehmsmeier, Marc. 2006. “RNAhybrid: microRNA target prediction easy, fast and flexible”. Nucleic Acids Research 34 (Web Server): W451-W454.

Krüger, J., and Rehmsmeier, M. (2006). RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research 34, W451-W454.

Krüger, J., & Rehmsmeier, M., 2006. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research, 34(Web Server), p W451-W454.

J. Krüger and M. Rehmsmeier, “RNAhybrid: microRNA target prediction easy, fast and flexible”, Nucleic Acids Research, vol. 34, 2006, pp. W451-W454.

Krüger, J., Rehmsmeier, M.: RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research. 34, W451-W454 (2006).

Krüger, Jan, and Rehmsmeier, Marc. “RNAhybrid: microRNA target prediction easy, fast and flexible”. Nucleic Acids Research 34.Web Server (2006): W451-W454.

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2019-09-06T08:48:09Z

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Najafi H, Soltani BM, Dokanehiifard S, Nasiri S, Mowla SJ., RNA 23(1), 2017
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Determining the Roles of Inositol Trisphosphate Receptors in Neurodegeneration: Interdisciplinary Perspectives on a Complex Topic.
Takada SH, Ikebara JM, de Sousa E, Cardoso DS, Resende RR, Ulrich H, Rückl M, Rüdiger S, Kihara AH., Mol Neurobiol 54(9), 2017
PMID: 27771899

Prediction of microRNAs involved in immune system diseases through network based features.
Prabahar A, Natarajan J., J Biomed Inform 65(), 2017
PMID: 27871823

Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences.
Leclercq M, Diallo AB, Blanchette M., Nucleic Acids Res 45(2), 2017
PMID: 27899600

YM500v3: a database for small RNA sequencing in human cancer research.
Chung IF, Chang SJ, Chen CY, Liu SH, Li CY, Chan CH, Shih CC, Cheng WC., Nucleic Acids Res 45(d1), 2017
PMID: 27899625

Estradiol regulates expression of miRNAs associated with myogenesis in rainbow trout.
Koganti PP, Wang J, Cleveland B, Ma H, Weber GM, Yao J., Mol Cell Endocrinol 443(), 2017
PMID: 28011237

Global identification of microRNAs associated with chlorantraniliprole resistance in diamondback moth Plutella xylostella (L.).
Zhu B, Li X, Liu Y, Gao X, Liang P., Sci Rep 7(), 2017
PMID: 28098189

MicroRNA-34 directly targets pair-rule genes and cytoskeleton component in the honey bee.
Freitas FC, Pires CV, Claudianos C, Cristino AS, Simões ZL., Sci Rep 7(), 2017
PMID: 28098233

Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome.
Andrews E, Wang Y, Xia T, Cheng W, Cheng C., PLoS Comput Biol 13(1), 2017
PMID: 28103241

The p53 protein induces stable miRNAs that have the potential to modify subsequent p53 responses.
Cabrita MA, Bose R, Vanzyl EJ, Pastic A, Marcellus KA, Pan E, Hamill JD, McKay BC., Gene 608(), 2017
PMID: 28119089

Transcriptome analysis reveals dynamic changes in coxsackievirus A16 infected HEK 293T cells.
Jin J, Li R, Jiang C, Zhang R, Ge X, Liang F, Sheng X, Dai W, Chen M, Wu J, Xiao J, Su W., BMC Genomics 18(suppl 1), 2017
PMID: 28198671

TFF3-dependent resistance of human colorectal adenocarcinoma cells HT-29/B6 to apoptosis is mediated by miR-491-5p regulation of lncRNA PRINS.
Hanisch C, Sharbati J, Kutz-Lohroff B, Huber O, Einspanier R, Sharbati S., Cell Death Discov 3(), 2017
PMID: 28149533

Genetic variant rs3750625 in the 3'UTR of ADRA2A affects stress-dependent acute pain severity after trauma and alters a microRNA-34a regulatory site.
Linnstaedt SD, Walker MG, Riker KD, Nyland JE, Hu J, Rossi C, Swor RA, Jones JS, Diatchenko L, Bortsov AV, Peak DA, McLean SA., Pain 158(2), 2017
PMID: 27805929

microRNA-625 inhibits tumorigenicity by suppressing proliferation, migration and invasion in malignant melanoma.
Fang W, Fan Y, Fa Z, Xu J, Yu H, Li P, Gu J., Oncotarget 8(8), 2017
PMID: 28129648

The role of microRNAs in Anopheles biology-an emerging research field.
Lampe L, Levashina EA., Parasite Immunol 39(2), 2017
PMID: 28299810

miRNAs target databases: developmental methods and target identification techniques with functional annotations.
Singh NK., Cell Mol Life Sci 74(12), 2017
PMID: 28204845

miR-203 enhances let-7 biogenesis by targeting LIN28B to suppress tumor growth in lung cancer.
Zhou Y, Liang H, Liao Z, Wang Y, Hu X, Chen X, Xu L, Hu Z., Sci Rep 7(), 2017
PMID: 28218277

Snail-Modulated MicroRNA 493 Forms a Negative Feedback Loop with the Insulin-Like Growth Factor 1 Receptor Pathway and Blocks Tumorigenesis.
Kumar AS, Jagadeeshan S, Pitani RS, Ramshankar V, Venkitasamy K, Venkatraman G, Rayala SK., Mol Cell Biol 37(6), 2017
PMID: 27956702

Mutation in cpsf6/CFIm68 (Cleavage and Polyadenylation Specificity Factor Subunit 6) causes short 3'UTRs and disturbs gene expression in developing embryos, as revealed by an analysis of primordial germ cell migration using the medaka mutant naruto.
Sasado T, Kondoh H, Furutani-Seiki M, Naruse K., PLoS One 12(3), 2017
PMID: 28253363

Overexpression of Exosomal Cardioprotective miRNAs Mitigates Hypoxia-Induced H9c2 Cells Apoptosis.
Zhang J, Ma J, Long K, Qiu W, Wang Y, Hu Z, Liu C, Luo Y, Jiang A, Jin L, Tang Q, Wang X, Li X, Li M., Int J Mol Sci 18(4), 2017
PMID: 28350318

miRTar2GO: a novel rule-based model learning method for cell line specific microRNA target prediction that integrates Ago2 CLIP-Seq and validated microRNA-target interaction data.
Ahadi A, Sablok G, Hutvagner G., Nucleic Acids Res 45(6), 2017
PMID: 27903911

The mir-675-5p regulates the progression and development of pancreatic cancer via the UBQLN1-ZEB1-mir200 axis.
Wang J, Zhang Y, Wei H, Zhang X, Wu Y, Gong A, Xia Y, Wang W, Xu M., Oncotarget 8(15), 2017
PMID: 28212565

Infections of virulent and avirulent viruses differentially influenced the expression of dicer-1, ago-1, and microRNAs in Bombus terrestris.
Niu J, Meeus I, De Coninck DI, Deforce D, Etebari K, Asgari S, Smagghe G., Sci Rep 7(), 2017
PMID: 28374846

A functional variant at the miRNA binding site in HMGB1 gene is associated with risk of oral squamous cell carcinoma.
Lin CW, Chou YE, Yeh CM, Yang SF, Chuang CY, Liu YF., Oncotarget 8(21), 2017
PMID: 28423715

3' UTR G-quadruplexes regulate miRNA binding.
Rouleau S, Glouzon JS, Brumwell A, Bisaillon M, Perreault JP., RNA 23(8), 2017
PMID: 28473452

Genetic 3'UTR variation is associated with human pigmentation characteristics and sensitivity to sunlight.
Hernando B, Peña-Chilet M, Ibarrola-Villava M, Martin-Gonzalez M, Gomez-Fernandez C, Ribas G, Martinez-Cadenas C., Exp Dermatol 26(10), 2017
PMID: 28266728

miR-375 Regulates Invasion-Related Proteins Vimentin and L-Plastin.
Jimenez L, Lim J, Burd B, Harris TM, Ow TJ, Kawachi N, Belbin TJ, Angeletti R, Prystowsky MB, Childs G, Segall JE., Am J Pathol 187(7), 2017
PMID: 28499703

The Fragment HMGA2-sh-3p20 from HMGA2 mRNA 3'UTR Promotes the Growth of Hepatoma Cells by Upregulating HMGA2.
Wang Y, Chen F, Yang Z, Zhao M, Zhang S, Gao Y, Feng J, Yang G, Zhang W, Ye L, Zhang X., Sci Rep 7(1), 2017
PMID: 28522832

MicroRNAs 146a/b-5 and 425-3p and 24-3p are markers of antidepressant response and regulate MAPK/Wnt-system genes.
Lopez JP, Fiori LM, Cruceanu C, Lin R, Labonte B, Cates HM, Heller EA, Vialou V, Ku SM, Gerald C, Han MH, Foster J, Frey BN, Soares CN, Müller DJ, Farzan F, Leri F, MacQueen GM, Feilotter H, Tyryshkin K, Evans KR, Giacobbe P, Blier P, Lam RW, Milev R, Parikh SV, Rotzinger S, Strother SC, Lewis CM, Aitchison KJ, Wittenberg GM, Mechawar N, Nestler EJ, Uher R, Kennedy SH, Turecki G., Nat Commun 8(), 2017
PMID: 28530238

MiR-145 mediates zebrafish hepatic outgrowth through progranulin A signaling.
Li YW, Chiang KY, Li YH, Wu SY, Liu W, Lin CR, Wu JL., PLoS One 12(5), 2017
PMID: 28531199

Posttranscriptional Interaction Between miR-450a-5p and miR-28-5p and STAT1 mRNA Triggers Osteoblastic Differentiation of Human Mesenchymal Stem Cells.
Dernowsek JA, Pereira MC, Fornari TA, Macedo C, Assis AF, Donate PB, Bombonato-Prado KF, Passos-Bueno MR, Passos GA., J Cell Biochem 118(11), 2017
PMID: 28407302

Analysis of sucrose-induced small RNAs in Streptococcus mutans in the presence of different sucrose concentrations.
Liu SS, Zhu WH, Zhi QH, Liu J, Wang Y, Lin HC., Appl Microbiol Biotechnol 101(14), 2017
PMID: 28567481

MicroRNAs control mRNA fate by compartmentalization based on 3' UTR length in male germ cells.
Zhang Y, Tang C, Yu T, Zhang R, Zheng H, Yan W., Genome Biol 18(1), 2017
PMID: 28615029

Post-transcriptional regulation of ERBB2 by miR26a/b and HuR confers resistance to tamoxifen in estrogen receptor-positive breast cancer cells.
Tan S, Ding K, Chong QY, Zhao J, Liu Y, Shao Y, Zhang Y, Yu Q, Xiong Z, Zhang W, Zhang M, Li G, Li X, Kong X, Ahmad A, Wu Z, Wu Q, Zhao X, Lobie PE, Zhu T., J Biol Chem 292(33), 2017
PMID: 28637868

A non-canonical site reveals the cooperative mechanisms of microRNA-mediated silencing.
Flamand MN, Gan HH, Mayya VK, Gunsalus KC, Duchaine TF., Nucleic Acids Res 45(12), 2017
PMID: 28482037

Zika virus alters the microRNA expression profile and elicits an RNAi response in Aedes aegypti mosquitoes.
Saldaña MA, Etebari K, Hart CE, Widen SG, Wood TG, Thangamani S, Asgari S, Hughes GL., PLoS Negl Trop Dis 11(7), 2017
PMID: 28715413

Genome reconstruction in Cynara cardunculus taxa gains access to chromosome-scale DNA variation.
Acquadro A, Barchi L, Portis E, Mangino G, Valentino D, Mauromicale G, Lanteri S., Sci Rep 7(1), 2017
PMID: 28717205

Investigation of the molecular mechanisms underlying myotonic dystrophy types 1 and 2 cataracts using microRNA‑target gene networks.
Shao D, Zhu X, Sun W, Huo L, Chen W, Wang H, Liu B, Pan P., Mol Med Rep 16(4), 2017
PMID: 28731161

MicroRNA-4639 Is a Regulator of DJ-1 Expression and a Potential Early Diagnostic Marker for Parkinson's Disease.
Chen Y, Gao C, Sun Q, Pan H, Huang P, Ding J, Chen S., Front Aging Neurosci 9(), 2017
PMID: 28785216

Using RNA sequencing to identify putative competing endogenous RNAs (ceRNAs) potentially regulating fat metabolism in bovine liver.
Liang R, Han B, Li Q, Yuan Y, Li J, Sun D., Sci Rep 7(1), 2017
PMID: 28743867

Association of microRNAs with Argonaute proteins in the malaria mosquito Anopheles gambiae after blood ingestion.
Fu X, Dimopoulos G, Zhu J., Sci Rep 7(1), 2017
PMID: 28747726

MiR-1254 suppresses HO-1 expression through seed region-dependent silencing and non-seed interaction with TFAP2A transcript to attenuate NSCLC growth.
Pu M, Li C, Qi X, Chen J, Wang Y, Gao L, Miao L, Ren J., PLoS Genet 13(7), 2017
PMID: 28749936

SmithRNAs: Could Mitochondria "Bend" Nuclear Regulation?
Pozzi A, Plazzi F, Milani L, Ghiselli F, Passamonti M., Mol Biol Evol 34(8), 2017
PMID: 28444389

Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function.
Piwecka M, Glažar P, Hernandez-Miranda LR, Memczak S, Wolf SA, Rybak-Wolf A, Filipchyk A, Klironomos F, Cerda Jara CA, Fenske P, Trimbuch T, Zywitza V, Plass M, Schreyer L, Ayoub S, Kocks C, Kühn R, Rosenmund C, Birchmeier C, Rajewsky N., Science 357(6357), 2017
PMID: 28798046

Global mapping of miRNA-target interactions in cattle (Bos taurus).
Scheel TKH, Moore MJ, Luna JM, Nishiuchi E, Fak J, Darnell RB, Rice CM., Sci Rep 7(1), 2017
PMID: 28811507

MicroRNA expression profiling of porcine mammary epithelial cells after challenge with Escherichia coli in vitro.
Jaeger A, Hadlich F, Kemper N, Lübke-Becker A, Muráni E, Wimmers K, Ponsuksili S., BMC Genomics 18(1), 2017
PMID: 28836962

Analysis of gene expression profiling variations induced by hsa‑miR‑145‑5p‑overexpression in laryngeal squamous cell carcinoma cell line Tu‑177.
Ding Y, Wu Y, Gao W, Zhang C, Zhao Q, Guo H, Qu X, Wen S, Wang B., Mol Med Rep 16(5), 2017
PMID: 28849105

5'-UTR and 3'-UTR Regulation of MICB Expression in Human Cancer Cells by Novel microRNAs.
Wongfieng W, Jumnainsong A, Chamgramol Y, Sripa B, Leelayuwat C., Genes (Basel) 8(9), 2017
PMID: 28850101

Plant microRNAs in larval food regulate honeybee caste development.
Zhu K, Liu M, Fu Z, Zhou Z, Kong Y, Liang H, Lin Z, Luo J, Zheng H, Wan P, Zhang J, Zen K, Chen J, Hu F, Zhang CY, Ren J, Chen X., PLoS Genet 13(8), 2017
PMID: 28859085

Multiple miRNAs jointly regulate the biosynthesis of ecdysteroid in the holometabolous insects, Chilo suppressalis.
He K, Sun Y, Xiao H, Ge C, Li F, Han Z., RNA 23(12), 2017
PMID: 28860304

Common microRNA-mRNA interactions exist among distinct porcine iPSC lines independent of their metastable pluripotent states.
Zhang S, Xie Y, Cao H, Wang H., Cell Death Dis 8(8), 2017
PMID: 29048434

The downregulation of putative anticancer target BORIS/CTCFL in an addicted myeloid cancer cell line modulates the expression of multiple protein coding and ncRNA genes.
Teplyakov E, Wu Q, Liu J, Pugacheva EM, Loukinov D, Boukaba A, Lobanenkov V, Strunnikov A., Oncotarget 8(43), 2017
PMID: 29088719

Impact of microRNA-34a and polymorphism of its target gene CA9 on susceptibility to uterine cervical cancer.
Yang SF, Liu YF, Cheng CW, Yang WE, Lin WL, Ko JL, Wang PH., Oncotarget 8(44), 2017
PMID: 29100431

Identification of circular RNA in the Bombyx mori silk gland.
Gan H, Feng T, Wu Y, Liu C, Xia Q, Cheng T., Insect Biochem Mol Biol 89(), 2017
PMID: 28918159

Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly.
Cagirici HB, Biyiklioglu S, Budak H., Front Plant Sci 8(), 2017
PMID: 29038661

MicroRNAs in Taenia solium Neurocysticercosis: Insights as Promising Agents in Host-Parasite Interaction and Their Potential as Biomarkers.
Gutierrez-Loli R, Orrego MA, Sevillano-Quispe OG, Herrera-Arrasco L, Guerra-Giraldez C., Front Microbiol 8(), 2017
PMID: 29033926

Genome-wide profiling of Sus scrofa circular RNAs across nine organs and three developmental stages.
Liang G, Yang Y, Niu G, Tang Z, Li K., DNA Res 24(5), 2017
PMID: 28575165

miR-200b downregulates Kruppel Like Factor 2 (KLF2) during acute hypoxia in human endothelial cells.
Bartoszewski R, Serocki M, Janaszak-Jasiecka A, Bartoszewska S, Kochan-Jamrozy K, Piotrowski A, Króliczewski J, Collawn JF., Eur J Cell Biol 96(8), 2017
PMID: 29042072

miR-1 suppresses the proliferation and promotes the apoptosis of esophageal carcinoma cells by targeting Src.
Liao Z, Wang X, Liang H, Yu A, Ur Rehman U, Fan Q, Hu Y, Wang C, Zhou Z, Wang T., Cancer Med 6(12), 2017
PMID: 29034995

Computational tools for plant small RNA detection and categorization.
Morgado L, Johannes F., Brief Bioinform (), 2017
PMID: 29059285

Identification and Characterization of MicroRNAs in the Goat (Capra hircus) Rumen during Embryonic Development.
Zhong T, Hu J, Xiao P, Zhan S, Wang L, Guo J, Li L, Zhang H, Niu L., Front Genet 8(), 2017
PMID: 29123545

Transcriptomic profiling in human mesangial cells using patient-derived lupus autoantibodies identified miR-10a as a potential regulator of IL8.
Tangtanatakul P, Thammasate B, Jacquet A, Reantragoon R, Pisitkun T, Avihingsanon Y, Leelahavanichkul A, Hirankarn N., Sci Rep 7(1), 2017
PMID: 29109423

Identification of Viscum album L. miRNAs and prediction of their medicinal values.
Xie W, Adolf J, Melzig MF., PLoS One 12(11), 2017
PMID: 29112983

Global Transcriptome Analysis of Aedes aegypti Mosquitoes in Response to Zika Virus Infection.
Etebari K, Hegde S, Saldaña MA, Widen SG, Wood TG, Asgari S, Hughes GL., mSphere 2(6), 2017
PMID: 29202041

MicroRNAs regulate the sesquiterpenoid hormonal pathway in Drosophila and other arthropods.
Qu Z, Bendena WG, Nong W, Siggens KW, Noriega FG, Kai ZP, Zang YY, Koon AC, Chan HYE, Chan TF, Chu KH, Lam HM, Akam M, Tobe SS, Lam Hui JH., Proc Biol Sci 284(1869), 2017
PMID: 29237851

MicroRNA-497-5p Suppresses Tumor Cell Growth of Osteosarcoma by Targeting ADP Ribosylation Factor-Like Protein 2.
Sun Z, Li A, Yu Z, Li X, Guo X, Chen R., Cancer Biother Radiopharm 32(10), 2017
PMID: 29265919

Mycobacterium tuberculosis Modulates miR-106b-5p to Control Cathepsin S Expression Resulting in Higher Pathogen Survival and Poor T-Cell Activation.
Pires D, Bernard EM, Pombo JP, Carmo N, Fialho C, Gutierrez MG, Bettencourt P, Anes E., Front Immunol 8(), 2017
PMID: 29326705

Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks.
Zeng X, Zhang X, Zou Q., Brief Bioinform 17(2), 2016
PMID: 26059461

Similarity computation strategies in the microRNA-disease network: a survey.
Zou Q, Li J, Song L, Zeng X, Wang G., Brief Funct Genomics 15(1), 2016
PMID: 26134276

Elevation of miR-21, through targeting MKK3, may be involved in ischemia pretreatment protection from ischemia-reperfusion induced kidney injury.
Li Z, Deng X, Kang Z, Wang Y, Xia T, Ding N, Yin Y., J Nephrol 29(1), 2016
PMID: 26149640

DynaMIT: the dynamic motif integration toolkit.
Dassi E, Quattrone A., Nucleic Acids Res 44(1), 2016
PMID: 26253738

Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress.
Bobrovskyy M, Vanderpool CK., Mol Microbiol 99(2), 2016
PMID: 26411266

MicroRNA-138 Inhibits Periodontal Progenitor Differentiation under Inflammatory Conditions.
Zhou X, Luan X, Chen Z, Francis M, Gopinathan G, Li W, Lu X, Li S, Wu C, Diekwisch TG., J Dent Res 95(2), 2016
PMID: 26518300

A positive feedback loop of p53/miR-19/TP53INP1 modulates pancreatic cancer cell proliferation and apoptosis.
Wang X, Wang L, Mo Q, Jia A, Dong Y, Wang G., Oncol Rep 35(1), 2016
PMID: 26531836

Analysis of miRNA expression profiling in mouse spleen affected by acute Toxoplasma gondii infection.
He JJ, Ma J, Wang JL, Xu MJ, Zhu XQ., Infect Genet Evol 37(), 2016
PMID: 26569573

MicroRNAs: exploring new horizons in osteoarthritis.
Nugent M., Osteoarthritis Cartilage 24(4), 2016
PMID: 26576510

Bioinformatic tools for microRNA dissection.
Akhtar MM, Micolucci L, Islam MS, Olivieri F, Procopio AD., Nucleic Acids Res 44(1), 2016
PMID: 26578605

MiRTDL: A Deep Learning Approach for miRNA Target Prediction.
Shuang Cheng, Maozu Guo, Chunyu Wang, Xiaoyan Liu, Yang Liu, Xuejian Wu., IEEE/ACM Trans Comput Biol Bioinform 13(6), 2016
PMID: 28055894

LDL accelerates monocyte to macrophage differentiation: Effects on adhesion and anoikis.
Escate R, Padro T, Badimon L., Atherosclerosis 246(), 2016
PMID: 26800307

MicroRNA Profiles in Spontaneous Decidualized Menstrual Endometrium and Early Pregnancy Decidua with Successfully Implanted Embryos.
Wang Y, Lv Y, Gao S, Zhang Y, Sun J, Gong C, Chen X, Li G., PLoS One 11(1), 2016
PMID: 26735129

Integrated analysis of microRNA regulatory network in nasopharyngeal carcinoma with deep sequencing.
Wang F, Lu J, Peng X, Wang J, Liu X, Chen X, Jiang Y, Li X, Zhang B., J Exp Clin Cancer Res 35(), 2016
PMID: 26795575

A Temperature Sensitive Variant of p53 Drives p53-Dependent MicroRNA Expression without Evidence of Widespread Post-Transcriptional Gene Silencing.
Cabrita MA, Vanzyl EJ, Hamill JD, Pan E, Marcellus KA, Tolls VJ, Alonzi RC, Pastic A, Rambo TM, Sayed H, McKay BC., PLoS One 11(2), 2016
PMID: 26840126

MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.).
Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simões ZL., Insect Mol Biol 25(3), 2016
PMID: 26853694

Identification of differentially expressed miRNAs in individual breast cancer patient and application in personalized medicine.
Peng F, Zhang Y, Wang R, Zhou W, Zhao Z, Liang H, Qi L, Zhao W, Wang H, Wang C, Guo Z, Gu Y., Oncogenesis 5(), 2016
PMID: 26878388

SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features.
Zhou Y, Zeng P, Li YH, Zhang Z, Cui Q., Nucleic Acids Res 44(10), 2016
PMID: 26896799

Rhythmic expression of miR-27b-3p targets the clock gene Bmal1 at the posttranscriptional level in the mouse liver.
Zhang W, Wang P, Chen S, Zhang Z, Liang T, Liu C., FASEB J 30(6), 2016
PMID: 26919869

Cis-acting elements in its 3' UTR mediate post-transcriptional regulation of KRAS.
Kim M, Kogan N, Slack FJ., Oncotarget 7(11), 2016
PMID: 26930719

miR-429 regulates the transition between Hypoxia-Inducible Factor (HIF)1A and HIF3A expression in human endothelial cells.
Janaszak-Jasiecka A, Bartoszewska S, Kochan K, Piotrowski A, Kalinowski L, Kamysz W, Ochocka RJ, Bartoszewski R, Collawn JF., Sci Rep 6(), 2016
PMID: 26954587

Mycobacterium bovis BCG Interferes with miR-3619-5p Control of Cathepsin S in the Process of Autophagy.
Pawar K, Sharbati J, Einspanier R, Sharbati S., Front Cell Infect Microbiol 6(), 2016
PMID: 27014637

Ancestral vinclozolin exposure alters the epigenetic transgenerational inheritance of sperm small noncoding RNAs.
Schuster A, Skinner MK, Yan W., Environ Epigenet 2(1), 2016
PMID: 27390623

CCAR1 5' UTR as a natural miRancer of miR-1254 overrides tamoxifen resistance.
Li G, Wu X, Qian W, Cai H, Sun X, Zhang W, Tan S, Wu Z, Qian P, Ding K, Lu X, Zhang X, Yan H, Song H, Guang S, Wu Q, Lobie PE, Shan G, Zhu T., Cell Res 26(6), 2016
PMID: 27002217

Long non-coding RNA containing ultraconserved genomic region 8 promotes bladder cancer tumorigenesis.
Olivieri M, Ferro M, Terreri S, Durso M, Romanelli A, Avitabile C, De Cobelli O, Messere A, Bruzzese D, Vannini I, Marinelli L, Novellino E, Zhang W, Incoronato M, Ilardi G, Staibano S, Marra L, Franco R, Perdonà S, Terracciano D, Czerniak B, Liguori GL, Colonna V, Fabbri M, Febbraio F, Calin GA, Cimmino A., Oncotarget 7(15), 2016
PMID: 26943042

The myogenic electric organ of Sternopygus macrurus: a non-contractile tissue with a skeletal muscle transcriptome.
Pinch M, Güth R, Samanta MP, Chaidez A, Unguez GA., PeerJ 4(), 2016
PMID: 27114860

ChemiRs: a web application for microRNAs and chemicals.
Su EC, Chen YS, Tien YC, Liu J, Ho BC, Yu SL, Singh S., BMC Bioinformatics 17(), 2016
PMID: 27091357

Web-based tools for microRNAs involved in human cancer.
Mar-Aguilar F, Rodríguez-Padilla C, Reséndez-Pérez D., Oncol Lett 11(6), 2016
PMID: 27284356

Circulating microRNA profiles of Ebola virus infection.
Duy J, Koehler JW, Honko AN, Schoepp RJ, Wauquier N, Gonzalez JP, Pitt ML, Mucker EM, Johnson JC, O'Hearn A, Bangura J, Coomber M, Minogue TD., Sci Rep 6(), 2016
PMID: 27098369

NEAT1 is Required for Survival of Breast Cancer Cells Through FUS and miR-548.
Ke H, Zhao L, Feng X, Xu H, Zou L, Yang Q, Su X, Peng L, Jiao B., Gene Regul Syst Bio 10(suppl 1), 2016
PMID: 27147820

Comprehensive Transcriptome Analysis of Sex-Biased Expressed Genes Reveals Discrete Biological and Physiological Features of Male and Female Schistosoma japonicum.
Cai P, Liu S, Piao X, Hou N, Gobert GN, McManus DP, Chen Q., PLoS Negl Trop Dis 10(4), 2016
PMID: 27128440

Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis.
Hutchins ED, Eckalbar WL, Wolter JM, Mangone M, Kusumi K., BMC Genomics 17(), 2016
PMID: 27150582

Hsa-miR-24-3p increases nasopharyngeal carcinoma radiosensitivity by targeting both the 3'UTR and 5'UTR of Jab1/CSN5.
Wang S, Pan Y, Zhang R, Xu T, Wu W, Zhang R, Wang C, Huang H, Calin CA, Yang H, Claret FX., Oncogene 35(47), 2016
PMID: 27157611

miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis.
Andrés-León E, Núñez-Torres R, Rojas AM., Sci Rep 6(), 2016
PMID: 27167008

DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data.
Zhang Y, Zang Q, Zhang H, Ban R, Yang Y, Iqbal F, Li A, Shi Q., Nucleic Acids Res 44(w1), 2016
PMID: 27179030

TarPmiR: a new approach for microRNA target site prediction.
Ding J, Li X, Hu H., Bioinformatics 32(18), 2016
PMID: 27207945

Association of a let-7 miRNA binding region of TGFBR1 with hereditary mismatch repair proficient colorectal cancer (MSS HNPCC).
Xicola RM, Bontu S, Doyle BJ, Rawson J, Garre P, Lee E, de la Hoya M, Bessa X, Clofent J, Bujanda L, Balaguer F, Castellví-Bel S, Alenda C, Jover R, Ruiz-Ponte C, Syngal S, Andreu M, Carracedo A, Castells A, Newcomb PA, Lindor N, Potter JD, Baron JA, Ellis NA, Caldes T, LLor X., Carcinogenesis 37(8), 2016
PMID: 27234654

Identification of associations between small molecule drugs and miRNAs based on functional similarity.
Wang J, Meng F, Dai E, Yang F, Wang S, Chen X, Yang L, Wang Y, Jiang W., Oncotarget 7(25), 2016
PMID: 27232942

Comprehensive analysis of high-throughput screens with HiTSeekR.
List M, Schmidt S, Christiansen H, Rehmsmeier M, Tan Q, Mollenhauer J, Baumbach J., Nucleic Acids Res 44(14), 2016
PMID: 27330136

Genetic variants within microRNA-binding site of RAD51B are associated with risk of cervical cancer in Chinese women.
Hang D, Zhou W, Jia M, Wang L, Zhou J, Yin Y, Ma H, Hu Z, Li N, Shen H., Cancer Med 5(9), 2016
PMID: 27334422

miR-638 suppresses DNA damage repair by targeting SMC1A expression in terminally differentiated cells.
He M, Lin Y, Tang Y, Liu Y, Zhou W, Li C, Sun G, Guo M., Aging (Albany NY) 8(7), 2016
PMID: 27405111

miR-9 Acts as an OncomiR in Prostate Cancer through Multiple Pathways That Drive Tumour Progression and Metastasis.
Seashols-Williams SJ, Budd W, Clark GC, Wu Q, Daniel R, Dragoescu E, Zehner ZE., PLoS One 11(7), 2016
PMID: 27447934

Deep sequencing reveals global patterns of mRNA recruitment during translation initiation.
Gao R, Yu K, Nie J, Lian T, Jin J, Liljas A, Su XD., Sci Rep 6(), 2016
PMID: 27460773

The genetic variants in 3' untranslated region of voltage-gated sodium channel alpha 1 subunit gene affect the mRNA-microRNA interactions and associate with epilepsy.
Li T, Kuang Y, Li B., BMC Genet 17(1), 2016
PMID: 27473590

MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities.
Liu X, Trakooljul N, Hadlich F, Muráni E, Wimmers K, Ponsuksili S., BMC Genomics 17(), 2016
PMID: 27485725

microRNA-309 targets the Homeobox gene SIX4 and controls ovarian development in the mosquito Aedes aegypti.
Zhang Y, Zhao B, Roy S, Saha TT, Kokoza VA, Li M, Raikhel AS., Proc Natl Acad Sci U S A 113(33), 2016
PMID: 27489347

The Expression of Human Cytomegalovirus MicroRNA MiR-UL148D during Latent Infection in Primary Myeloid Cells Inhibits Activin A-triggered Secretion of IL-6.
Lau B, Poole E, Krishna B, Sellart I, Wills MR, Murphy E, Sinclair J., Sci Rep 6(), 2016
PMID: 27491954

Revised annotation of Plutella xylostella microRNAs and their genome-wide target identification.
Etebari K, Asgari S., Insect Mol Biol 25(6), 2016
PMID: 27515977

In silico dissection of miRNA targetome polymorphisms and their role in regulating miRNA-mediated gene expression in esophageal cancer.
Nariman-Saleh-Fam Z, Bastami M, Somi MH, Samadi N, Abbaszadegan MR, Behjati F, Ghaedi H, Tavakkoly-Bazzaz J, Masotti A., Cell Biochem Biophys 74(4), 2016
PMID: 27518186

BDE47 induces rat CYP3A1 by targeting the transcriptional regulation of miR-23b.
Sun Z, Zhang Z, Ji M, Yang H, Cromie M, Gu J, Wang C, Yang L, Yu Y, Gao W, Wang SL., Sci Rep 6(), 2016
PMID: 27546062

Development of Insulin Resistance through Induction of miRNA-135 in C2C12 Cells.
Honardoost M, Arefian E, Soleimani M, Soudi S, Sarookhani MR., Cell J 18(3), 2016
PMID: 27602317

MicroRNA-21 regulates prostaglandin E2 signaling pathway by targeting 15-hydroxyprostaglandin dehydrogenase in tongue squamous cell carcinoma.
He Q, Chen Z, Dong Q, Zhang L, Chen D, Patel A, Koya A, Luan X, Cabay RJ, Dai Y, Wang A, Zhou X., BMC Cancer 16(1), 2016
PMID: 27561985

Ago-RIP-Seq identifies Polycomb repressive complex I member CBX7 as a major target of miR-375 in prostate cancer progression.
Pickl JM, Tichy D, Kuryshev VY, Tolstov Y, Falkenstein M, Schüler J, Reidenbach D, Hotz-Wagenblatt A, Kristiansen G, Roth W, Hadaschik B, Hohenfellner M, Duensing S, Heckmann D, Sültmann H., Oncotarget 7(37), 2016
PMID: 27449098

Computational identification and characterization of novel microRNA in the mammary gland of dairy goat (Capra hircus).
Qu B, Qiu Y, Zhen Z, Zhao F, Wang C, Cui Y, Li Q, Zhang L., J Genet 95(3), 2016
PMID: 27659334

The miRNA targetome of coronary artery disease is perturbed by functional polymorphisms identified and prioritized by in-depth bioinformatics analyses exploiting genome-wide association studies.
Bastami M, Nariman-Saleh-Fam Z, Saadatian Z, Nariman-Saleh-Fam L, Omrani MD, Ghaderian SMH, Masotti A., Gene 594(1), 2016
PMID: 27596011

SpermBase: A Database for Sperm-Borne RNA Contents.
Schuster A, Tang C, Xie Y, Ortogero N, Yuan S, Yan W., Biol Reprod 95(5), 2016
PMID: 27628216

Prediction of Host-Derived miRNAs with the Potential to Target PVY in Potato Plants.
Iqbal MS, Hafeez MN, Wattoo JI, Ali A, Sharif MN, Rashid B, Tabassum B, Nasir IA., Front Genet 7(), 2016
PMID: 27683585

MicroRNA-137 Inhibits EFNB2 Expression Affected by a Genetic Variant and Is Expressed Aberrantly in Peripheral Blood of Schizophrenia Patients.
Wu S, Zhang R, Nie F, Wang X, Jiang C, Liu M, Valenzuela RK, Liu W, Shi Y, Ma J., EBioMedicine 12(), 2016
PMID: 27650867

Toward the promise of microRNAs - Enhancing reproducibility and rigor in microRNA research.
Witwer KW, Halushka MK., RNA Biol 13(11), 2016
PMID: 27645402

MiRNATIP: a SOM-based miRNA-target interactions predictor.
Fiannaca A, Rosa M, Paglia L, Rizzo R, Urso A., BMC Bioinformatics 17(suppl 11), 2016
PMID: 28185545

MiR-154 directly suppresses DKK2 to activate Wnt signaling pathway and enhance activation of cardiac fibroblasts.
Sun LY, Bie ZD, Zhang CH, Li H, Li LD, Yang J., Cell Biol Int 40(12), 2016
PMID: 27542661

MicroRNA expression signatures in lungs of mice infected with Mycobacterium tuberculosis.
Malardo T, Gardinassi LG, Moreira BP, Padilha É, Lorenzi JC, Soares LS, Gembre AF, Fontoura IC, de Almeida LP, de Miranda Santos IK, Silva CL, Coelho-Castelo AA., Tuberculosis (Edinb) 101(), 2016
PMID: 27865387

MicroRNAs in the Host Response to Viral Infections of Veterinary Importance.
Samir M, Vaas LA, Pessler F., Front Vet Sci 3(), 2016
PMID: 27800484

Dietary Gluten-Induced Gut Dysbiosis Is Accompanied by Selective Upregulation of microRNAs with Intestinal Tight Junction and Bacteria-Binding Motifs in Rhesus Macaque Model of Celiac Disease.
Mohan M, Chow CT, Ryan CN, Chan LS, Dufour J, Aye PP, Blanchard J, Moehs CP, Sestak K., Nutrients 8(11), 2016
PMID: 27801835

MicroRNA-424 impairs ubiquitination to activate STAT3 and promote prostate tumor progression.
Dallavalle C, Albino D, Civenni G, Merulla J, Ostano P, Mello-Grand M, Rossi S, Losa M, D'Ambrosio G, Sessa F, Thalmann GN, Garcia-Escudero R, Zitella A, Chiorino G, Catapano CV, Carbone GM., J Clin Invest 126(12), 2016
PMID: 27820701

Iron Homeostasis Regulates the Genotoxicity of Escherichia coli That Produces Colibactin.
Tronnet S, Garcie C, Rehm N, Dobrindt U, Oswald E, Martin P., Infect Immun 84(12), 2016
PMID: 27620723

miRNAsong: a web-based tool for generation and testing of miRNA sponge constructs in silico.
Barta T, Peskova L, Hampl A., Sci Rep 6(), 2016
PMID: 27857164

Aire Downregulation Is Associated with Changes in the Posttranscriptional Control of Peripheral Tissue Antigens in Medullary Thymic Epithelial Cells.
Oliveira EH, Macedo C, Collares CV, Freitas AC, Donate PB, Sakamoto-Hojo ET, Donadi EA, Passos GA., Front Immunol 7(), 2016
PMID: 27933063

The microRNA toolkit of insects.
Ylla G, Fromm B, Piulachs MD, Belles X., Sci Rep 6(), 2016
PMID: 27883064

MicroRNA-like viral small RNA from porcine reproductive and respiratory syndrome virus negatively regulates viral replication by targeting the viral nonstructural protein 2.
Li N, Yan Y, Zhang A, Gao J, Zhang C, Wang X, Hou G, Zhang G, Jia J, Zhou EM, Xiao S., Oncotarget 7(50), 2016
PMID: 27769040

Altered levels of circulating cytokines and microRNAs in lean and obese individuals with prediabetes and type 2 diabetes.
Nunez Lopez YO, Garufi G, Seyhan AA., Mol Biosyst 13(1), 2016
PMID: 27869909

MicroRNAs modulate adaption to multiple abiotic stresses in Chlamydomonas reinhardtii.
Gao X, Zhang F, Hu J, Cai W, Shan G, Dai D, Huang K, Wang G., Sci Rep 6(), 2016
PMID: 27910907

Tools for Sequence-Based miRNA Target Prediction: What to Choose?
Riffo-Campos ÁL, Riquelme I, Brebi-Mieville P., Int J Mol Sci 17(12), 2016
PMID: 27941681

Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases.
Zhang HM, Kuang S, Xiong X, Gao T, Liu C, Guo AY., Brief Bioinform 16(1), 2015
PMID: 24307685

Honeysuckle-encoded atypical microRNA2911 directly targets influenza A viruses.
Zhou Z, Li X, Liu J, Dong L, Chen Q, Liu J, Kong H, Zhang Q, Qi X, Hou D, Zhang L, Zhang G, Liu Y, Zhang Y, Li J, Wang J, Chen X, Wang H, Zhang J, Chen H, Zen K, Zhang CY., Cell Res 25(1), 2015
PMID: 25287280

Human L-DOPA decarboxylase mRNA is a target of miR-145: A prediction to validation workflow.
Papadopoulos EI, Fragoulis EG, Scorilas A., Gene 554(2), 2015
PMID: 25445287

Identification of a functional SNP in the 3'UTR of CXCR2 that is associated with reduced risk of lung cancer.
Ryan BM, Robles AI, McClary AC, Haznadar M, Bowman ED, Pine SR, Brown D, Khan M, Shiraishi K, Kohno T, Okayama H, Modali R, Yokota J, Harris CC., Cancer Res 75(3), 2015
PMID: 25480945

Alteration of the miRNA expression profile in male porcine anterior pituitary cells in response to GHRH and CST and analysis of the potential roles for miRNAs in regulating GH.
Qi QE, Xi QY, Ye RS, Chen T, Cheng X, Li CY, Zhu XT, Shu G, Wang LN, Jiang QY, Zhang YL., Growth Horm IGF Res 25(2), 2015
PMID: 25613666

HDAC inhibitors target HDAC5, upregulate microRNA-125a-5p, and induce apoptosis in breast cancer cells.
Hsieh TH, Hsu CY, Tsai CF, Long CY, Wu CH, Wu DC, Lee JN, Chang WC, Tsai EM., Mol Ther 23(4), 2015
PMID: 25531695

The hypoxia-inducible miR-429 regulates hypoxia-inducible factor-1α expression in human endothelial cells through a negative feedback loop.
Bartoszewska S, Kochan K, Piotrowski A, Kamysz W, Ochocka RJ, Collawn JF, Bartoszewski R., FASEB J 29(4), 2015
PMID: 25550463

An assessment of bacterial small RNA target prediction programs.
Pain A, Ott A, Amine H, Rochat T, Bouloc P, Gautheret D., RNA Biol 12(5), 2015
PMID: 25760244

Mosquito-specific microRNA-1890 targets the juvenile hormone-regulated serine protease JHA15 in the female mosquito gut.
Lucas KJ, Zhao B, Roy S, Gervaise AL, Raikhel AS., RNA Biol 12(12), 2015
PMID: 26488481

Bioinformatics Resources for MicroRNA Discovery.
Moore AC, Winkjer JS, Tseng TT., Biomark Insights 10(suppl 4), 2015
PMID: 26819547

MicroRNA-8 targets the Wingless signaling pathway in the female mosquito fat body to regulate reproductive processes.
Lucas KJ, Roy S, Ha J, Gervaise AL, Kokoza VA, Raikhel AS., Proc Natl Acad Sci U S A 112(5), 2015
PMID: 25605933

A complex genome-microRNA interplay in human mitochondria.
Shinde S, Bhadra U., Biomed Res Int 2015(), 2015
PMID: 25695052

Identifying microRNAs involved in cancer pathway using support vector machines.
Kothandan R, Biswas S., Comput Biol Chem 55(), 2015
PMID: 25677919

Detecting key genes regulated by miRNAs in dysfunctional crosstalk pathway of myasthenia gravis.
Cao Y, Wang J, Zhang H, Tian Q, Chen L, Ning S, Liu P, Sun X, Lu X, Song C, Zhang S, Xiao B, Wang L., Biomed Res Int 2015(), 2015
PMID: 25705681

Identification of differentially expressed microRNAs in placentas of cloned and normally produced calves by Solexa sequencing.
Su J, Liu X, Sun H, Wang Y, Wu Y, Guo Z, Zhang Y., Anim Reprod Sci 155(), 2015
PMID: 25735829

Properties and kinetics of microRNA regulation through canonical seed sites.
Chen JS, Revilla AC, Guerrero M, Gumbayan AM, Zeller RW., J RNAi Gene Silencing 11(), 2015
PMID: 25870651

MicroRNA regulation of central glial cell line-derived neurotrophic factor (GDNF) signalling in depression.
Maheu M, Lopez JP, Crapper L, Davoli MA, Turecki G, Mechawar N., Transl Psychiatry 5(), 2015
PMID: 25689572

Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21.
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK., PLoS One 10(2), 2015
PMID: 25693181

Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit.
Yuan Y, Liu B, Xie P, Zhang MQ, Li Y, Xie Z, Wang X., Proc Natl Acad Sci U S A 112(10), 2015
PMID: 25713348

MicroRNAs and drought responses in sugarcane.
Gentile A, Dias LI, Mattos RS, Ferreira TH, Menossi M., Front Plant Sci 6(), 2015
PMID: 25755657

A hairpin within YAP mRNA 3'UTR functions in regulation at post-transcription level.
Gao Y, Wang Y, Feng J, Feng G, Zheng M, Yang Z, Xiao Z, Lu Z, Ye L, Zhang X., Biochem Biophys Res Commun 459(2), 2015
PMID: 25727017

Dynamics of gene expression patterns during early development of the European seabass (Dicentrarchus labrax).
Kaitetzidou E, Xiang J, Antonopoulou E, Tsigenopoulos CS, Sarropoulou E., Physiol Genomics 47(5), 2015
PMID: 25736025

MicroRNAome in decidua: a new approach to assess the maintenance of pregnancy.
Wang Y, Lv Y, Wang L, Gong C, Sun J, Chen X, Chen Y, Yang L, Zhang Y, Yang X, Bai C, Wei Z, Li G., Fertil Steril 103(4), 2015
PMID: 25747134

miR-186 and 326 predict the prognosis of pancreatic ductal adenocarcinoma and affect the proliferation and migration of cancer cells.
Zhang ZL, Bai ZH, Wang XB, Bai L, Miao F, Pei HH., PLoS One 10(3), 2015
PMID: 25742499

Identification of AGO3-associated miRNAs and computational prediction of their targets in the green alga Chlamydomonas reinhardtii.
Voshall A, Kim EJ, Ma X, Moriyama EN, Cerutti H., Genetics 200(1), 2015
PMID: 25769981

MicroRNA-499 expression distinctively correlates to target genes sox6 and rod1 profiles to resolve the skeletal muscle phenotype in Nile tilapia.
Nachtigall PG, Dias MC, Carvalho RF, Martins C, Pinhal D., PLoS One 10(3), 2015
PMID: 25793727

Heme oxygenase-1 modulates microRNA expression in cultured astroglia: implications for chronic brain disorders.
Lin SH, Song W, Cressatti M, Zukor H, Wang E, Schipper HM., Glia 63(7), 2015
PMID: 25820186

Dynamic expression of miRNAs across immature and adult stages of the malaria mosquito Anopheles stephensi.
Jain S, Rana V, Tridibes A, Sunil S, Bhatnagar RK., Parasit Vectors 8(), 2015
PMID: 25888742

Hcmv-miR-UL22A-5p: A Biomarker in Transplantation With Broad Impact on Host Gene Expression and Potential Immunological Implications.
Lisboa LF, Egli A, O'Shea D, Åsberg A, Hartmann A, Rollag H, Pang XL, Tyrrell DL, Kumar D, Humar A., Am J Transplant 15(7), 2015
PMID: 25833298

miRGate: a curated database of human, mouse and rat miRNA-mRNA targets.
Andrés-León E, González Peña D, Gómez-López G, Pisano DG., Database (Oxford) 2015(), 2015
PMID: 25858286

HIF-inducible miR-191 promotes migration in breast cancer through complex regulation of TGFβ-signaling in hypoxic microenvironment.
Nagpal N, Ahmad HM, Chameettachal S, Sundar D, Ghosh S, Kulshreshtha R., Sci Rep 5(), 2015
PMID: 25867965

MicroRNA-765 influences arterial stiffness through modulating apelin expression.
Liao YC, Wang YS, Hsi E, Chang MH, You YZ, Juo SH., Mol Cell Endocrinol 411(), 2015
PMID: 25882991

Micro RNA-124a regulates lipolysis via adipose triglyceride lipase and comparative gene identification 58.
Das SK, Stadelmeyer E, Schauer S, Schwarz A, Strohmaier H, Claudel T, Zechner R, Hoefler G, Vesely PW., Int J Mol Sci 16(4), 2015
PMID: 25894224

The PTEN-AKT-mTOR/RICTOR Pathway in Nasal Natural Killer Cell Lymphoma Is Activated by miR-494-3p via PTEN But Inhibited by miR-142-3p via RICTOR.
Chen HH, Huang WT, Yang LW, Lin CW., Am J Pathol 185(5), 2015
PMID: 25907832

MicroRNA-128 targets myostatin at coding domain sequence to regulate myoblasts in skeletal muscle development.
Shi L, Zhou B, Li P, Schinckel AP, Liang T, Wang H, Li H, Fu L, Chu Q, Huang R., Cell Signal 27(9), 2015
PMID: 25958325

MicroRNAs Regulate Cellular ATP Levels by Targeting Mitochondrial Energy Metabolism Genes during C2C12 Myoblast Differentiation.
Siengdee P, Trakooljul N, Murani E, Schwerin M, Wimmers K, Ponsuksili S., PLoS One 10(5), 2015
PMID: 26010876

Analysis of miRNA, mRNA, and TF interactions through network-based methods.
Guzzi PH, Di Martino MT, Tagliaferri P, Tassone P, Cannataro M., EURASIP J Bioinform Syst Biol 2015(), 2015
PMID: 28194173

Comparative Profiling of MicroRNAs in Male and Female Rhipicephalus sanguineus.
Shao CC, Xu MJ, Chen YZ, Tao JP, Zhu XQ., Appl Biochem Biotechnol 176(7), 2015
PMID: 26054615

Downregulation of microRNA-409-3p promotes aggressiveness and metastasis in colorectal cancer: an indication for personalized medicine.
Liu M, Xu A, Yuan X, Zhang Q, Fang T, Wang W, Li C., J Transl Med 13(), 2015
PMID: 26084278

Integrating full spectrum of sequence features into predicting functional microRNA-mRNA interactions.
Wang Z, Xu W, Liu Y., Bioinformatics 31(21), 2015
PMID: 26130578

A post-transcriptional mechanism pacing expression of neural genes with precursor cell differentiation status.
Dai W, Li W, Hoque M, Li Z, Tian B, Makeyev EV., Nat Commun 6(), 2015
PMID: 26144867

Deep sequencing analysis of microRNA expression in human melanocyte and melanoma cell lines.
Ding N, Wang S, Yang Q, Li Y, Cheng H, Wang J, Wang D, Deng Y, Yang Y, Hu S, Zhao H, Fang X., Gene 572(1), 2015
PMID: 26164755

Post-Transcriptional Regulation of Renalase Gene by miR-29 and miR-146 MicroRNAs: Implications for Cardiometabolic Disorders.
Kalyani A, Sonawane PJ, Khan AA, Subramanian L, Ehret GB, Mullasari AS, Mahapatra NR., J Mol Biol 427(16), 2015
PMID: 26165231

MicroRNA, Pm-miR-2305, Participates in Nacre Formation by Targeting Pearlin in Pearl Oyster Pinctada martensii.
Jiao Y, Zheng Z, Tian R, Du X, Wang Q, Huang R., Int J Mol Sci 16(9), 2015
PMID: 26370972

Expression Change of miR-214 and miR-135 during Muscle Differentiation.
Honardoost M, Soleimani M, Arefian E, Sarookhani MR., Cell J 17(3), 2015
PMID: 26464817

Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize.
Fan C, Hao Z, Yan J, Li G., BMC Genomics 16(), 2015
PMID: 26470872

Small RNAs in Plant Responses to Abiotic Stresses: Regulatory Roles and Study Methods.
Ku YS, Wong JW, Mui Z, Liu X, Hui JH, Chan TF, Lam HM., Int J Mol Sci 16(10), 2015
PMID: 26501263

miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data.
Kaushik A, Saraf S, Mukherjee SK, Gupta D., PeerJ 3(), 2015
PMID: 26623179

Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution.
Tripathi A, Goswami K, Sanan-Mishra N., Front Physiol 6(), 2015
PMID: 26578966

Dengue virus infection alters post-transcriptional modification of microRNAs in the mosquito vector Aedes aegypti.
Etebari K, Osei-Amo S, Blomberg SP, Asgari S., Sci Rep 5(), 2015
PMID: 26514826

miR-346 Up-regulates Argonaute 2 (AGO2) Protein Expression to Augment the Activity of Other MicroRNAs (miRNAs) and Contributes to Cervical Cancer Cell Malignancy.
Guo J, Lv J, Liu M, Tang H., J Biol Chem 290(51), 2015
PMID: 26518874

Dual Action of miR-125b As a Tumor Suppressor and OncomiR-22 Promotes Prostate Cancer Tumorigenesis.
Budd WT, Seashols-Williams SJ, Clark GC, Weaver D, Calvert V, Petricoin E, Dragoescu EA, O'Hanlon K, Zehner ZE., PLoS One 10(11), 2015
PMID: 26544868

High-throughput sequencing of RNAs isolated by cross-linking immunoprecipitation (HITS-CLIP) reveals Argonaute-associated microRNAs and targets in Schistosoma japonicum.
Zhao J, Luo R, Xu X, Zou Y, Zhang Q, Pan W., Parasit Vectors 8(), 2015
PMID: 26577460

miRNA⁻mRNA Conflux Regulating Immunity and Oxidative Stress Pathways in the Midgut of Blood-Fed Anopheles stephensi.
Jain S, Shrinet J, Tridibes A, Bhatnagar RK, Sunil S., Noncoding RNA 1(3), 2015
PMID: 29861425

MatPred: Computational Identification of Mature MicroRNAs within Novel Pre-MicroRNAs.
Li J, Wang Y, Wang L, Feng W, Luan K, Dai X, Xu C, Meng X, Zhang Q, Liang H., Biomed Res Int 2015(), 2015
PMID: 26682221

miRNA-target chimeras reveal miRNA 3'-end pairing as a major determinant of Argonaute target specificity.
Moore MJ, Scheel TK, Luna JM, Park CY, Fak JJ, Nishiuchi E, Rice CM, Darnell RB., Nat Commun 6(), 2015
PMID: 26602609

MicroRNA target prediction using thermodynamic and sequence curves.
Ghoshal A, Shankar R, Bagchi S, Grama A, Chaterji S., BMC Genomics 16(), 2015
PMID: 26608597

MicroRNA Expression in the Glaucomatous Retina.
Jayaram H, Cepurna WO, Johnson EC, Morrison JC., Invest Ophthalmol Vis Sci 56(13), 2015
PMID: 26720444

CancerNet: a database for decoding multilevel molecular interactions across diverse cancer types.
Meng X, Wang J, Yuan C, Li X, Zhou Y, Hofestädt R, Chen M., Oncogenesis 4(), 2015
PMID: 26690544

Non-coding yet non-trivial: a review on the computational genomics of lincRNAs.
Ching T, Masaki J, Weirather J, Garmire LX., BioData Min 8(), 2015
PMID: 26697116

G-A variant in miR-200c binding site of EFNA1 alters susceptibility to gastric cancer.
Li Y, Nie Y, Cao J, Tu S, Lin Y, Du Y, Li Y., Mol Carcinog 53(3), 2014
PMID: 23065816

BCR-ABL/GATA1/miR-138 mini circuitry contributes to the leukemogenesis of chronic myeloid leukemia.
Xu C, Fu H, Gao L, Wang L, Wang W, Li J, Li Y, Dou L, Gao X, Luo X, Jing Y, Chim CS, Zheng X, Yu L., Oncogene 33(1), 2014
PMID: 23208504

miR-194 suppresses metastasis of non-small cell lung cancer through regulating expression of BMP1 and p27(kip1).
Wu X, Liu T, Fang O, Leach LJ, Hu X, Luo Z., Oncogene 33(12), 2014
PMID: 23584484

Identification and characterization of microRNAs in pearl oyster Pinctada martensii by Solexa deep sequencing.
Jiao Y, Zheng Z, Du X, Wang Q, Huang R, Deng Y, Shi S, Zhao X., Mar Biotechnol (NY) 16(1), 2014
PMID: 23877619

Post-transcriptional regulation of DNA damage-responsive gene expression.
McKay BC., Antioxid Redox Signal 20(4), 2014
PMID: 23905704

Regulatory role of miRNAs in polyamine gene expression in the prefrontal cortex of depressed suicide completers.
Lopez JP, Fiori LM, Gross JA, Labonte B, Yerko V, Mechawar N, Turecki G., Int J Neuropsychopharmacol 17(1), 2014
PMID: 24025154

Human heart rate: heritability of resting and stress values in twin pairs, and influence of genetic variation in the adrenergic pathway at a microribonucleic acid (microrna) motif in the 3'-UTR of cytochrome b561 [corrected].
Zhang K, Deacon DC, Rao F, Schork AJ, Fung MM, Waalen J, Schork NJ, Nievergelt CM, Chi NC, O'Connor DT., J Am Coll Cardiol 63(4), 2014
PMID: 24140660

MicroRNA-494 reduces DJ-1 expression and exacerbates neurodegeneration.
Xiong R, Wang Z, Zhao Z, Li H, Chen W, Zhang B, Wang L, Wu L, Li W, Ding J, Chen S., Neurobiol Aging 35(3), 2014
PMID: 24269020

Binding and processing of small dsRNA molecules by the class 1 RNase III protein encoded by sweet potato chlorotic stunt virus.
Weinheimer I, Boonrod K, Moser M, Wassenegger M, Krczal G, Butcher SJ, Valkonen JP., J Gen Virol 95(pt 2), 2014
PMID: 24187016

Prometastatic GPCR CD97 is a direct target of tumor suppressor microRNA-126.
Lu YY, Sweredoski MJ, Huss D, Lansford R, Hess S, Tirrell DA., ACS Chem Biol 9(2), 2014
PMID: 24274104

Single nucleotide polymorphisms in microRNA binding sites of oncogenes: implications in cancer and pharmacogenomics.
Manikandan M, Munirajan AK., OMICS 18(2), 2014
PMID: 24286505

HITS-CLIP and PAR-CLIP advance viral miRNA targetome analysis.
Haecker I, Renne R., Crit Rev Eukaryot Gene Expr 24(2), 2014
PMID: 24940765

mirMark: a site-level and UTR-level classifier for miRNA target prediction.
Menor M, Ching T, Zhu X, Garmire D, Garmire LX., Genome Biol 15(10), 2014
PMID: 25344330

Regulation of MAP kinase signaling cascade by microRNAs in Oryza sativa.
Raghuram B, Sheikh AH, Sinha AK., Plant Signal Behav 9(10), 2014
PMID: 25482813

Transcriptome-wide discovery of microRNA binding sites in human brain.
Boudreau RL, Jiang P, Gilmore BL, Spengler RM, Tirabassi R, Nelson JA, Ross CA, Xing Y, Davidson BL., Neuron 81(2), 2014
PMID: 24389009

Profiling and characterization of eggplant (Solanum melongena L.) microRNAs and their targets.
Din M, Barozai MY., Mol Biol Rep 41(2), 2014
PMID: 24390233

Next generation sequencing reveals regulation of distinct Aedes microRNAs during chikungunya virus development.
Shrinet J, Jain S, Jain J, Bhatnagar RK, Sunil S., PLoS Negl Trop Dis 8(1), 2014
PMID: 24421911

OncomiRdbB: a comprehensive database of microRNAs and their targets in breast cancer.
Khurana R, Verma VK, Rawoof A, Tiwari S, Nair RA, Mahidhara G, Idris MM, Clarke AR, Kumar LD., BMC Bioinformatics 15(), 2014
PMID: 24428888

MiR-133b is frequently decreased in gastric cancer and its overexpression reduces the metastatic potential of gastric cancer cells.
Zhao Y, Huang J, Zhang L, Qu Y, Li J, Yu B, Yan M, Yu Y, Liu B, Zhu Z., BMC Cancer 14(), 2014
PMID: 24443799

Plant miRNAome and antiviral resistance: a retrospective view and prospective challenges.
Ramesh SV, Ratnaparkhe MB, Kumawat G, Gupta GK, Husain SM., Virus Genes 48(1), 2014
PMID: 24445902

lncRNAMap: a map of putative regulatory functions in the long non-coding transcriptome.
Chan WL, Huang HD, Chang JG., Comput Biol Chem 50(), 2014
PMID: 24525374

Extracting rate changes in transcriptional regulation from MEDLINE abstracts.
Liu W, Miao K, Li G, Chang K, Zheng J, Rajapakse JC., BMC Bioinformatics 15 Suppl 2(), 2014
PMID: 24564647

The panorama of miRNA-mediated mechanisms in mammalian cells.
Stroynowska-Czerwinska A, Fiszer A, Krzyzosiak WJ., Cell Mol Life Sci 71(12), 2014
PMID: 24468964

Extensive sequence variation in the 3' untranslated region of the KRAS gene in lung and ovarian cancer cases.
Kim M, Chen X, Chin LJ, Paranjape T, Speed WC, Kidd KK, Zhao H, Weidhaas JB, Slack FJ., Cell Cycle 13(6), 2014
PMID: 24552817

Computational developments in microRNA-regulated protein-protein interactions.
Zhu W, Chen YP., BMC Syst Biol 8(), 2014
PMID: 24507415

MicroRNA profile analysis of a feline kidney cell line before and after infection with mink enteritis virus.
Sun JZ, Wang J, Wang S, Yuan D, Birame BM, Li Z, Yi B, Liu W., Gene 539(2), 2014
PMID: 24525403

MicroRNA-target binding structures mimic microRNA duplex structures in humans.
Chen X, Shen L, Chou HH., PLoS One 9(2), 2014
PMID: 24551166

Transcriptional consequences of schizophrenia candidate miR-137 manipulation in human neural progenitor cells.
Hill MJ, Donocik JG, Nuamah RA, Mein CA, Sainz-Fuertes R, Bray NJ., Schizophr Res 153(1-3), 2014
PMID: 24556472

Common features of microRNA target prediction tools.
Peterson SM, Thompson JA, Ufkin ML, Sathyanarayana P, Liaw L, Congdon CB., Front Genet 5(), 2014
PMID: 24600468

A non-canonical plant microRNA target site.
Brousse C, Liu Q, Beauclair L, Deremetz A, Axtell MJ, Bouché N., Nucleic Acids Res 42(8), 2014
PMID: 24561804

Systematic design and functional analysis of artificial microRNAs.
Arroyo JD, Gallichotte EN, Tewari M., Nucleic Acids Res 42(9), 2014
PMID: 24598260

A computational model for non-conserved mature miRNAs from the rice genome.
Kumar SP, Pandya HA, Jasrai YT., SAR QSAR Environ Res 25(3), 2014
PMID: 24601753

Global characterization of microRNAs in Trichomonas gallinae.
Xu MJ, Qiu SB, Nisbet AJ, Fu JH, Shao CC, Zhu XQ., Parasit Vectors 7(), 2014
PMID: 24612519

Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer.
Zhang W, Zang J, Jing X, Sun Z, Yan W, Yang D, Shen B, Guo F., J Transl Med 12(), 2014
PMID: 24618011

comTAR: a web tool for the prediction and characterization of conserved microRNA targets in plants.
Chorostecki U, Palatnik JF., Bioinformatics 30(14), 2014
PMID: 24632500

Identification and characterization of a subset of microRNAs in wheat (Triticum aestivum L.).
Su C, Yang X, Gao S, Tang Y, Zhao C, Li L., Genomics 103(4), 2014
PMID: 24667243

EBV-encoded miR-BART20-5p and miR-BART8 inhibit the IFN-γ-STAT1 pathway associated with disease progression in nasal NK-cell lymphoma.
Huang WT, Lin CW., Am J Pathol 184(4), 2014
PMID: 24655378

Mining the 3'UTR of autism-implicated genes for SNPs perturbing microRNA regulation.
Vaishnavi V, Manikandan M, Munirajan AK., Genomics Proteomics Bioinformatics 12(2), 2014
PMID: 24747189

Comparative analysis of microRNA profiles between adult Ascaris lumbricoides and Ascaris suum.
Shao CC, Xu MJ, Alasaad S, Song HQ, Peng L, Tao JP, Zhu XQ., BMC Vet Res 10(), 2014
PMID: 24766827

A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction.
Srivastava PK, Moturu TR, Pandey P, Baldwin IT, Pandey SP., BMC Genomics 15(), 2014
PMID: 24885295

Axl-altered microRNAs regulate tumorigenicity and gefitinib resistance in lung cancer.
Wang Y, Xia H, Zhuang Z, Miao L, Chen X, Cai H., Cell Death Dis 5(), 2014
PMID: 24832599

Hsa-miRNA-765 as a key mediator for inhibiting growth, migration and invasion in fulvestrant-treated prostate cancer.
Leung YK, Chan QK, Ng CF, Ma FM, Tse HM, To KF, Maranchie J, Ho SM, Lau KM., PLoS One 9(5), 2014
PMID: 24837491

In silico prediction of cotton (Gossypium hirsutum) encoded microRNAs targets in the genome of Cotton leaf curl Allahabad virus.
Shweta, Khan JA., Bioinformation 10(5), 2014
PMID: 24966530

Blood feeding and Plasmodium infection alters the miRNome of Anopheles stephensi.
Jain S, Rana V, Shrinet J, Sharma A, Tridibes A, Sunil S, Bhatnagar RK., PLoS One 9(5), 2014
PMID: 24866389

Identifying microRNA targets in different gene regions.
Xu W, San Lucas A, Wang Z, Liu Y., BMC Bioinformatics 15 Suppl 7(), 2014
PMID: 25077573

miR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment.
Lopez JP, Lim R, Cruceanu C, Crapper L, Fasano C, Labonte B, Maussion G, Yang JP, Yerko V, Vigneault E, El Mestikawy S, Mechawar N, Pavlidis P, Turecki G., Nat Med 20(7), 2014
PMID: 24908571

MicroRNA-296-5p (miR-296-5p) functions as a tumor suppressor in prostate cancer by directly targeting Pin1.
Lee KH, Lin FC, Hsu TI, Lin JT, Guo JH, Tsai CH, Lee YC, Lee YC, Chen CL, Hsiao M, Lu PJ., Biochim Biophys Acta 1843(9), 2014
PMID: 24915000

Identification of putative pathogenic SNPs implied in schizophrenia-associated miRNAs.
Sun X, Zhang J., BMC Bioinformatics 15(), 2014
PMID: 24934851

Crosstalk between glioma-initiating cells and endothelial cells drives tumor progression.
Jeon HM, Kim SH, Jin X, Park JB, Kim SH, Joshi K, Nakano I, Kim H., Cancer Res 74(16), 2014
PMID: 24962027

Thermal plasticity of the miRNA transcriptome during Senegalese sole development.
Campos C, Sundaram AY, Valente LM, Conceição LE, Engrola S, Fernandes JM., BMC Genomics 15(), 2014
PMID: 24966054

Global analysis of the ovarian microRNA transcriptome: implication for miR-2 and miR-133 regulation of oocyte meiosis in the Chinese mitten crab, Eriocheir sinensis (Crustacea:Decapoda).
Song YN, Shi LL, Liu ZQ, Qiu GF., BMC Genomics 15(), 2014
PMID: 24984770

StemSearch: RNA search tool based on stem identification and indexing.
Milo N, Yogev S, Ziv-Ukelson M., Methods 69(3), 2014
PMID: 25009129

MiR-153 targets the nuclear factor-1 family and protects against teratogenic effects of ethanol exposure in fetal neural stem cells.
Tsai PC, Bake S, Balaraman S, Rawlings J, Holgate RR, Dubois D, Miranda RC., Biol Open 3(8), 2014
PMID: 25063196

MicroRNA-150 predicts a favorable prognosis in patients with epithelial ovarian cancer, and inhibits cell invasion and metastasis by suppressing transcriptional repressor ZEB1.
Jin M, Yang Z, Ye W, Xu H, Hua X., PLoS One 9(8), 2014
PMID: 25090005

Current understanding of the role of microRNAs in spinocerebellar ataxias.
Koscianska E, Krzyzosiak WJ., Cerebellum Ataxias 1(), 2014
PMID: 26331031

Identifying a polymorphic 'switch' that influences miRNAs' regulation of a myasthenia gravis risk pathway.
Yang L, Wang J, Sun X, Cao Y, Ning S, Zhang H, Chen L, Li R, Tian Q, Wang L, Wang W, Li X., PLoS One 9(8), 2014
PMID: 25118158

Hsa-miR-195 targets PCMT1 in hepatocellular carcinoma that increases tumor life span.
Amer M, Elhefnawi M, El-Ahwany E, Awad AF, Gawad NA, Zada S, Tawab FM., Tumour Biol 35(11), 2014
PMID: 25119594

MicroRNA-570-3p regulates HuR and cytokine expression in airway epithelial cells.
Roff AN, Craig TJ, August A, Stellato C, Ishmael FT., Am J Clin Exp Immunol 3(2), 2014
PMID: 25143867

A mouse polyomavirus-encoded microRNA targets the cellular apoptosis pathway through Smad2 inhibition.
Sung CK, Yim H, Andrews E, Benjamin TL., Virology 468-470(), 2014
PMID: 25146733

Selective targeting of KRAS-mutant cells by miR-126 through repression of multiple genes essential for the survival of KRAS-mutant cells.
Hara T, Jones MF, Subramanian M, Li XL, Ou O, Zhu Y, Yang Y, Wakefield LM, Hussain SP, Gaedcke J, Ried T, Luo J, Caplen NJ, Lal A., Oncotarget 5(17), 2014
PMID: 25245095

Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus).
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M., BMC Genomics 15(), 2014
PMID: 25199625

Identification of 14-3-3β gene as a novel miR-152 target using a proteome-based approach.
Jasinski-Bergner S, Stehle F, Gonschorek E, Kalich J, Schulz K, Huettelmaier S, Braun J, Seliger B., J Biol Chem 289(45), 2014
PMID: 25228695

The characterization of microRNA-mediated gene regulation as impacted by both target site location and seed match type.
Xu W, Wang Z, Liu Y., PLoS One 9(9), 2014
PMID: 25238537

Mosquito-specific microRNA-1174 targets serine hydroxymethyltransferase to control key functions in the gut.
Liu S, Lucas KJ, Roy S, Ha J, Raikhel AS., Proc Natl Acad Sci U S A 111(40), 2014
PMID: 25246546

CD49f-positive testicular cells in Saanen dairy goat were identified as spermatogonia-like cells by miRNA profiling analysis.
Wu J, Liao M, Zhu H, Kang K, Mu H, Song W, Niu Z, He X, Bai C, Li G, Li X, Hua J., J Cell Biochem 115(10), 2014
PMID: 24817091

MicroRNAs as predictive biomarkers and therapeutic targets in prostate cancer.
Wen X, Deng FM, Wang J., Am J Clin Exp Urol 2(3), 2014
PMID: 25374924

Dissecting the mechanism of carotid atherosclerosis from the perspective of regulation.
Lin M, Zhao L, Zhao W, Weng J., Int J Mol Med 34(6), 2014
PMID: 25318463

Cellular microRNAs up-regulate transcription via interaction with promoter TATA-box motifs.
Zhang Y, Fan M, Zhang X, Huang F, Wu K, Zhang J, Liu J, Huang Z, Luo H, Tao L, Zhang H., RNA 20(12), 2014
PMID: 25336585

Prioritizing candidate disease miRNAs by integrating phenotype associations of multiple diseases with matched miRNA and mRNA expression profiles.
Xu C, Ping Y, Li X, Zhao H, Wang L, Fan H, Xiao Y, Li X., Mol Biosyst 10(11), 2014
PMID: 25099736

A genetic variant of miR-148a binding site in the SCRN1 3'-UTR is associated with susceptibility and prognosis of gastric cancer.
Song P, Zhu H, Zhang D, Chu H, Wu D, Kang M, Wang M, Gong W, Zhou J, Zhang Z, Zhao Q., Sci Rep 4(), 2014
PMID: 25399950

MicroRNA-9 controls dendritic development by targeting REST.
Giusti SA, Vogl AM, Brockmann MM, Vercelli CA, Rein ML, Trümbach D, Wurst W, Cazalla D, Stein V, Deussing JM, Refojo D., Elife 3(), 2014
PMID: 25406064

microPIR2: a comprehensive database for human-mouse comparative study of microRNA-promoter interactions.
Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S., Database (Oxford) 2014(), 2014
PMID: 25425035

MicroRNA miR-320a and miR-140 inhibit mink enteritis virus infection by repression of its receptor, feline transferrin receptor.
Sun JZ, Wang J, Wang S, Yuan D, Li Z, Yi B, Hou Q, Mao Y, Liu W., Virol J 11(), 2014
PMID: 25465595

A Computational Approach for Predicting Role of Human MicroRNAs in MERS-CoV Genome.
Hasan MM, Akter R, Ullah MS, Abedin MJ, Ullah GM, Hossain MZ., Adv Bioinformatics 2014(), 2014
PMID: 25610462

MicroRNA-24 regulates XIAP to reduce the apoptosis threshold in cancer cells.
Xie Y, Tobin LA, Camps J, Wangsa D, Yang J, Rao M, Witasp E, Awad KS, Yoo N, Ried T, Kwong KF., Oncogene 32(19), 2013
PMID: 22733138

A reversed framework for the identification of microRNA-target pairs in plants.
Shao C, Chen M, Meng Y., Brief Bioinform 14(3), 2013
PMID: 22811545

Small RNAs of Sequoia sempervirens during rejuvenation and phase change.
Chen YT, Shen CH, Lin WD, Chu HA, Huang BL, Kuo CI, Yeh KW, Huang LC, Chang IF., Plant Biol (Stuttg) 15(1), 2013
PMID: 23016572

MicroRNA-10A* and MicroRNA-21 modulate endothelial progenitor cell senescence via suppressing high-mobility group A2.
Zhu S, Deng S, Ma Q, Zhang T, Jia C, Zhuo D, Yang F, Wei J, Wang L, Dykxhoorn DM, Hare JM, Goldschmidt-Clermont PJ, Dong C., Circ Res 112(1), 2013
PMID: 23072816

An insect trypsin-like serine protease as a target of microRNA: utilization of microRNA mimics and inhibitors by oral feeding.
Jayachandran B, Hussain M, Asgari S., Insect Biochem Mol Biol 43(4), 2013
PMID: 23108205

Insect microRNAs: biogenesis, expression profiling and biological functions.
Lucas K, Raikhel AS., Insect Biochem Mol Biol 43(1), 2013
PMID: 23165178

Genetic variation in a hsa-let-7 binding site in RAD52 is associated with breast cancer susceptibility.
Jiang Y, Qin Z, Hu Z, Guan X, Wang Y, He Y, Xue J, Liu X, Chen J, Dai J, Jin G, Ma H, Wang S, Shen H., Carcinogenesis 34(3), 2013
PMID: 23188672

Identification of microRNAs regulated by isothiocyanates and association of polymorphisms inside their target sites with risk of sporadic colorectal cancer.
Slaby O, Sachlova M, Brezkova V, Hezova R, Kovarikova A, Bischofová S, Sevcikova S, Bienertova-Vasku J, Vasku A, Svoboda M, Vyzula R., Nutr Cancer 65(2), 2013
PMID: 23441612

Comparative profiling of microRNAs in male and female adults of Ascaris suum.
Xu MJ, Fu JH, Nisbet AJ, Huang SY, Zhou DH, Lin RQ, Song HQ, Zhu XQ., Parasitol Res 112(3), 2013
PMID: 23306386

Polymorphisms in microRNA target sites influence susceptibility to schizophrenia by altering the binding of miRNAs to their targets.
Gong Y, Wu CN, Xu J, Feng G, Xing QH, Fu W, Li C, He L, Zhao XZ., Eur Neuropsychopharmacol 23(10), 2013
PMID: 23332465

Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology.
Xu Z, Chen J, Li X, Ge J, Pan J, Xu X., PLoS One 8(1), 2013
PMID: 23342099

Identification of Dirofilaria immitis miRNA using illumina deep sequencing.
Fu Y, Lan J, Wu X, Yang D, Zhang Z, Nie H, Hou R, Zhang R, Zheng W, Xie Y, Yan N, Yang Z, Wang C, Luo L, Liu L, Gu X, Wang S, Peng X, Yang G., Vet Res 44(), 2013
PMID: 23331513

miR-133a regulates vitamin K 2,3-epoxide reductase complex subunit 1 (VKORC1), a key protein in the vitamin K cycle.
Pérez-Andreu V, Teruel R, Corral J, Roldán V, García-Barberá N, Salloum-Asfar S, Gómez-Lechón MJ, Bourgeois S, Deloukas P, Wadelius M, Vicente V, González-Conejero R, Martínez C., Mol Med 18(), 2013
PMID: 23154637

T cell post-transcriptional miRNA-mRNA interaction networks identify targets associated with susceptibility/resistance to collagen-induced arthritis.
Donate PB, Fornari TA, Macedo C, Cunha TM, Nascimento DC, Sakamoto-Hojo ET, Donadi EA, Cunha FQ, Passos GA., PLoS One 8(1), 2013
PMID: 23359619

Identification and characterization of microRNAs in the pancreatic fluke Eurytrema pancreaticum.
Xu MJ, Wang CR, Huang SY, Fu JH, Zhou DH, Chang QC, Zheng X, Zhu XQ., Parasit Vectors 6(), 2013
PMID: 23351883

Transcribed pseudogene ψPPM1K generates endogenous siRNA to suppress oncogenic cell growth in hepatocellular carcinoma.
Chan WL, Yuo CY, Yang WK, Hung SY, Chang YS, Chiu CC, Yeh KT, Huang HD, Chang JG., Nucleic Acids Res 41(6), 2013
PMID: 23376929

pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes.
Chan WL, Yang WK, Huang HD, Chang JG., Database (Oxford) 2013(), 2013
PMID: 23396300

MicroRNAome of Spodoptera frugiperda cells (Sf9) and its alteration following baculovirus infection.
Mehrabadi M, Hussain M, Asgari S., J Gen Virol 94(pt 6), 2013
PMID: 23407421

Analysis of the NCI-60 dataset for cancer-related microRNA and mRNA using expression profiles.
Weng CW, Lee SC, Lee YL, Ng KL., Comput Biol Chem 44(), 2013
PMID: 23499870

MicroRNA 375 mediates the signaling pathway of corticotropin-releasing factor (CRF) regulating pro-opiomelanocortin (POMC) expression by targeting mitogen-activated protein kinase 8.
Zhang N, Lin JK, Chen J, Liu XF, Liu JL, Luo HS, Li YQ, Cui S., J Biol Chem 288(15), 2013
PMID: 23430746

MicroRNAs and their putative targets in Brassica napus seed maturation.
Huang D, Koh C, Feurtado JA, Tsang EW, Cutler AJ., BMC Genomics 14(), 2013
PMID: 23448243

Structural and functional based identification of the bean (Phaseolus) microRNAs and their targets from expressed sequence tags.
Barozai MY, Din M, Baloch IA., J Struct Funct Genomics 14(1), 2013
PMID: 23605779

The impact of 3'UTR variants on differential expression of candidate cancer susceptibility genes.
Skeeles LE, Fleming JL, Mahler KL, Toland AE., PLoS One 8(3), 2013
PMID: 23472213

Whole-genome thermodynamic analysis reduces siRNA off-target effects.
Chen X, Liu P, Chou HH., PLoS One 8(3), 2013
PMID: 23484018

miRTar Hunter: a prediction system for identifying human microRNA target sites.
Park K, Kim KB., Mol Cells 35(3), 2013
PMID: 23475422

Online resources for miRNA analysis.
Vlachos IS, Hatzigeorgiou AG., Clin Biochem 46(10-11), 2013
PMID: 23518312

Identifying dysfunctional miRNA-mRNA regulatory modules by inverse activation, cofunction, and high interconnection of target genes: a case study of glioblastoma.
Xiao Y, Ping Y, Fan H, Xu C, Guan J, Zhao H, Li Y, Lv Y, Jin Y, Wang L, Li X., Neuro Oncol 15(7), 2013
PMID: 23516263

Effects of vitamin E on expressions of eight microRNAs in the liver of Nile tilapia (Oreochromis niloticus).
Tang XL, Xu MJ, Li ZH, Pan Q, Fu JH., Fish Shellfish Immunol 34(6), 2013
PMID: 23542605

ALPK1 genetic regulation and risk in relation to gout.
Ko AM, Tu HP, Liu TT, Chang JG, Yuo CY, Chiang SL, Chang SJ, Liu YF, Ko AM, Lee CH, Lee CP, Chang CM, Tsai SF, Ko YC., Int J Epidemiol 42(2), 2013
PMID: 23569188

Co-regulation of intragenic microRNA miR-153 and its host gene Ia-2 β: identification of miR-153 target genes with functions related to IA-2β in pancreas and brain.
Mandemakers W, Abuhatzira L, Xu H, Caromile LA, Hébert SS, Snellinx A, Morais VA, Matta S, Cai T, Notkins AL, De Strooper B., Diabetologia 56(7), 2013
PMID: 23595248

Characterization of novel precursor miRNAs using next generation sequencing and prediction of miRNA targets in Atlantic halibut.
Bizuayehu TT, Fernandes JM, Johansen SD, Babiak I., PLoS One 8(4), 2013
PMID: 23626677

Genes involved in the transition from normal epithelium to intraepithelial neoplasia are associated with colorectal cancer patient survival.
Shi X, Zhang Y, Cao B, Lu N, Feng L, Di X, Han N, Luo C, Wang G, Cheng S, Zhang K., Biochem Biophys Res Commun 435(2), 2013
PMID: 23628414

Antiviral Stratagems Against HIV-1 Using RNA Interference (RNAi) Technology.
Vlachakis D, Tsiliki G, Pavlopoulou A, Roubelakis MG, Tsaniras SC, Kossida S., Evol Bioinform Online 9(), 2013
PMID: 23761954

Comparative characterization of microRNA profiles of different genotypes of Toxoplasma gondii.
Xu MJ, Zhou DH, Huang SY, Zhao FR, Nisbet AJ, Lin RQ, Song HQ, Zhu XQ., Parasitology 140(9), 2013
PMID: 23714365

Search for signatures in miRNAs associated with cancer.
Kothandan R, Biswas S., Bioinformation 9(10), 2013
PMID: 23861569

Conserved microRNA miR-8 blocks activation of the Toll pathway by upregulating Serpin 27 transcripts.
Etebari K, Asgari S., RNA Biol 10(8), 2013
PMID: 23806890

Intestinal Salmonella typhimurium infection leads to miR-29a induced caveolin 2 regulation.
Hoeke L, Sharbati J, Pawar K, Keller A, Einspanier R, Sharbati S., PLoS One 8(6), 2013
PMID: 23826261

Deep parallel sequencing reveals conserved and novel miRNAs in gill and hepatopancreas of giant freshwater prawn.
Tan TT, Chen M, Harikrishna JA, Khairuddin N, Mohd Shamsudin MI, Zhang G, Bhassu S., Fish Shellfish Immunol 35(4), 2013
PMID: 23816854

miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
Bari A, Orazova S, Ivashchenko A., Biomed Res Int 2013(), 2013
PMID: 23936788

Identification and characterization of microRNAs in Baylisascaris schroederi of the giant panda.
Zhao GH, Xu MJ, Zhu XQ., Parasit Vectors 6(), 2013
PMID: 23883822

Post-transcriptional activation of a diguanylate cyclase by quorum sensing small RNAs promotes biofilm formation in Vibrio cholerae.
Zhao X, Koestler BJ, Waters CM, Hammer BK., Mol Microbiol 89(5), 2013
PMID: 23841714

Increased BCAR1 predicts poor outcomes of non-small cell lung cancer in multiple-center patients.
Deng B, Sun Z, Jason W, Yang P., Ann Surg Oncol 20 Suppl 3(), 2013
PMID: 23904007

MicroRNA-31 predicts the presence of lymph node metastases and survival in patients with lung adenocarcinoma.
Meng W, Ye Z, Cui R, Perry J, Dedousi-Huebner V, Huebner A, Wang Y, Li B, Volinia S, Nakanishi H, Kim T, Suh SS, Ayers LW, Ross P, Croce CM, Chakravarti A, Jin VX, Lautenschlaeger T., Clin Cancer Res 19(19), 2013
PMID: 23946296

miR-1247 functions by targeting cartilage transcription factor SOX9.
Martinez-Sanchez A, Murphy CL., J Biol Chem 288(43), 2013
PMID: 24014021

Regulation of the unfolded protein response by microRNAs.
Bartoszewska S, Kochan K, Madanecki P, Piotrowski A, Ochocka R, Collawn JF, Bartoszewski R., Cell Mol Biol Lett 18(4), 2013
PMID: 24092331

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes.
Shi H, Xu J, Zhang G, Xu L, Li C, Wang L, Zhao Z, Jiang W, Guo Z, Li X., BMC Syst Biol 7(), 2013
PMID: 24103777

Genetic variation in a microRNA-502 minding site in SET8 gene confers clinical outcome of non-small cell lung cancer in a Chinese population.
Xu J, Yin Z, Gao W, Liu L, Yin Y, Liu P, Shu Y., PLoS One 8(10), 2013
PMID: 24146953

Continuing analysis of microRNA origins: Formation from transposable element insertions and noncoding RNA mutations.
Roberts JT, Cooper EA, Favreau CJ, Howell JS, Lane LG, Mills JE, Newman DC, Perry TJ, Russell ME, Wallace BM, Borchert GM., Mob Genet Elements 3(6), 2013
PMID: 24475369

Identification and characterization of microRNAs involved in growth of blunt snout bream (Megalobrama amblycephala) by Solexa sequencing.
Yi S, Gao ZX, Zhao H, Zeng C, Luo W, Chen B, Wang WM., BMC Genomics 14(), 2013
PMID: 24188211

MicroRNAs: fundamental regulators of gene expression in major affective disorders and suicidal behavior?
Serafini G, Pompili M, Hansen KF, Obrietan K, Dwivedi Y, Amore M, Shomron N, Girardi P., Front Cell Neurosci 7(), 2013
PMID: 24298237

A useful method of identifying of miRNAs which can down-regulate Zeb-2.
Oba S, Mizutani T, Suzuki E, Nishimatsu H, Takahashi M, Ogawa Y, Kimura K, Hirata Y, Fujita T., BMC Res Notes 6(), 2013
PMID: 24245745

Structural analysis of microRNA-target interaction by sequential seed mutagenesis and stem-loop 3' RACE.
Bohmer M, Sharbati J, Zur Bruegge J, Einspanier R, Sharbati S., PLoS One 8(11), 2013
PMID: 24282594

MicroRNA-99 family members suppress Homeobox A1 expression in epithelial cells.
Chen D, Chen Z, Jin Y, Dragas D, Zhang L, Adjei BS, Wang A, Dai Y, Zhou X., PLoS One 8(12), 2013
PMID: 24312487

Cellular microRNA miR-181b inhibits replication of mink enteritis virus by repression of non-structural protein 1 translation.
Sun JZ, Wang J, Yuan D, Wang S, Li Z, Yi B, Mao Y, Hou Q, Liu W., PLoS One 8(12), 2013
PMID: 24349084

Dysregulated microRNAs in amyotrophic lateral sclerosis microglia modulate genes linked to neuroinflammation.
Parisi C, Arisi I, D'Ambrosi N, Storti AE, Brandi R, D'Onofrio M, Volonté C., Cell Death Dis 4(), 2013
PMID: 24336079

Identification of MicroRNAs and their targets in Helianthus.
Barozai MY, Baloch IA, Din M., Mol Biol Rep 39(3), 2012
PMID: 21670966

Dissection of human MiRNA regulatory influence to subpathway.
Li X, Jiang W, Li W, Lian B, Wang S, Liao M, Chen X, Wang Y, Lv Y, Wang S, Yang L., Brief Bioinform 13(2), 2012
PMID: 21908864

A novel mutation within the MIR96 gene causes non-syndromic inherited hearing loss in an Italian family by altering pre-miRNA processing.
Soldà G, Robusto M, Primignani P, Castorina P, Benzoni E, Cesarani A, Ambrosetti U, Asselta R, Duga S., Hum Mol Genet 21(3), 2012
PMID: 22038834

MicroRNA transgene overexpression complements deficiency-based modifier screens in Drosophila.
Szuplewski S, Kugler JM, Lim SF, Verma P, Chen YW, Cohen SM., Genetics 190(2), 2012
PMID: 22095085

Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis.
Gong J, Tong Y, Zhang HM, Wang K, Hu T, Shan G, Sun J, Guo AY., Hum Mutat 33(1), 2012
PMID: 22045659

MicroRNAs 296 and 298 are imprinted and part of the GNAS/Gnas cluster and miR-296 targets IKBKE and Tmed9.
Robson JE, Eaton SA, Underhill P, Williams D, Peters J., RNA 18(1), 2012
PMID: 22114321

MicroRNA miR-451 downregulates the PI3K/AKT pathway through CAB39 in human glioma.
Tian Y, Nan Y, Han L, Zhang A, Wang G, Jia Z, Hao J, Pu P, Zhong Y, Kang C., Int J Oncol 40(4), 2012
PMID: 22179124

Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis.
Yang X, Zhang H, Li L., Plant J 70(3), 2012
PMID: 22247970

MiRNAs and LincRNAs: Could they be considered as biomarkers in colorectal cancer?
Zarate R, Boni V, Bandres E, Garcia-Foncillas J., Int J Mol Sci 13(1), 2012
PMID: 22312290

Plant secondary siRNA production determined by microRNA-duplex structure.
Manavella PA, Koenig D, Weigel D., Proc Natl Acad Sci U S A 109(7), 2012
PMID: 22308502

Solexa sequencing identification of conserved and novel microRNAs in backfat of Large White and Chinese Meishan pigs.
Chen C, Deng B, Qiao M, Zheng R, Chai J, Ding Y, Peng J, Jiang S., PLoS One 7(2), 2012
PMID: 22355364

Genome-wide association study identified a narrow chromosome 1 region associated with chicken growth traits.
Xie L, Luo C, Zhang C, Zhang R, Tang J, Nie Q, Ma L, Hu X, Li N, Da Y, Zhang X., PLoS One 7(2), 2012
PMID: 22359555

Senescence is an endogenous trigger for microRNA-directed transcriptional gene silencing in human cells.
Benhamed M, Herbig U, Ye T, Dejean A, Bischof O., Nat Cell Biol 14(3), 2012
PMID: 22366686

Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing.
Peláez P, Trejo MS, Iñiguez LP, Estrada-Navarrete G, Covarrubias AA, Reyes JL, Sanchez F., BMC Genomics 13(), 2012
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MicroRNA profiles and their control of male gametophyte development in rice.
Peng H, Chun J, Ai TB, Tong YA, Zhang R, Zhao MM, Chen F, Wang SH., Plant Mol Biol 80(1), 2012
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microPIR: an integrated database of microRNA target sites within human promoter sequences.
Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S., PLoS One 7(3), 2012
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Screening for cancer associated MiRNAs through co-gene, co-function and co-pathway analysis.
Xiao X, Li D, Gao L, Li X, Wang Q, Zhang S, Liu Z., Comput Biol Med 42(5), 2012
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In-silico and in-vivo analyses of EST databases unveil conserved miRNAs from Carthamus tinctorius and Cynara cardunculus.
Catalano D, Pignone D, Sonnante G, Finetti-Sialer MM., BMC Bioinformatics 13 Suppl 4(), 2012
PMID: 22536958

miRNA in wound inflammation and angiogenesis.
Roy S, Sen CK., Microcirculation 19(3), 2012
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The novel 172 sheep (Ovis aries) microRNAs and their targets.
Barozai MY., Mol Biol Rep 39(5), 2012
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Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming.
Kato Y, Sato K, Asai K, Akutsu T., Nucleic Acids Res 40(web server issue), 2012
PMID: 22600734

Computational identification and experimental validation of microRNAs binding to the Alzheimer-related gene ADAM10.
Augustin R, Endres K, Reinhardt S, Kuhn PH, Lichtenthaler SF, Hansen J, Wurst W, Trümbach D., BMC Med Genet 13(), 2012
PMID: 22594617

Identification, expression and target gene analyses of Micrornas in Spodoptera litura.
Rao Z, He W, Liu L, Zheng S, Huang L, Feng Q., PLoS One 7(5), 2012
PMID: 22662202

Disease-linked microRNA-21 exhibits drastically reduced mRNA binding and silencing activity in healthy mouse liver.
Androsavich JR, Chau BN, Bhat B, Linsley PS, Walter NG., RNA 18(8), 2012
PMID: 22740638

The regulation of silkworm fibroin L chain production by miRNA-965 and miRNA-1926 in insect cells.
Huang Y, Zou Q, Song F, Wang X, Shen XJ., Bioorg Khim 38(4), 2012
PMID: 23189562

Identification and characterization of microRNA in the dairy goat (Capra hircus) mammary gland by Solexa deep-sequencing technology.
Ji Z, Wang G, Xie Z, Zhang C, Wang J., Mol Biol Rep 39(10), 2012
PMID: 22763736

Deregulation of type I IFN-dependent genes correlates with increased susceptibility to cytomegalovirus acute infection of dicer mutant mice.
Ostermann E, Tuddenham L, Macquin C, Alsaleh G, Schreiber-Becker J, Tanguy M, Bahram S, Pfeffer S, Georgel P., PLoS One 7(8), 2012
PMID: 22916300

miRNA_Targets: a database for miRNA target predictions in coding and non-coding regions of mRNAs.
Kumar A, Wong AK, Tizard ML, Moore RJ, Lefèvre C., Genomics 100(6), 2012
PMID: 22940442

Computational analysis of noncoding RNAs.
Washietl S, Will S, Hendrix DA, Goff LA, Rinn JL, Berger B, Kellis M., Wiley Interdiscip Rev RNA 3(6), 2012
PMID: 22991327

MicroRNAs from the same precursor have different targeting properties.
Marco A, Macpherson JI, Ronshaugen M, Griffiths-Jones S., Silence 3(1), 2012
PMID: 23016695

MicroRNAs in common human diseases.
Li Y, Kowdley KV., Genomics Proteomics Bioinformatics 10(5), 2012
PMID: 23200134

Neurofibromin 1 is a miRNA target in neurons.
Paschou M, Doxakis E., PLoS One 7(10), 2012
PMID: 23056445

One decade of development and evolution of microRNA target prediction algorithms.
Reyes-Herrera PH, Ficarra E., Genomics Proteomics Bioinformatics 10(5), 2012
PMID: 23200135

Predicting sRNAs and their targets in bacteria.
Li W, Ying X, Lu Q, Chen L., Genomics Proteomics Bioinformatics 10(5), 2012
PMID: 23200137

MicroRNAs differentially regulate carbonyl reductase 1 (CBR1) gene expression dependent on the allele status of the common polymorphic variant rs9024.
Kalabus JL, Cheng Q, Blanco JG., PLoS One 7(11), 2012
PMID: 23133646

Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5'-Position Alone.
Thieme CJ, Schudoma C, May P, Walther D., Front Plant Sci 3(), 2012
PMID: 23233858

MiRmat: mature microRNA sequence prediction.
He C, Li YX, Zhang G, Gu Z, Yang R, Li J, Lu ZJ, Zhou ZH, Zhang C, Wang J., PLoS One 7(12), 2012
PMID: 23300555

Comparative characterization of microRNAs from the liver flukes Fasciola gigantica and F. hepatica.
Xu MJ, Ai L, Fu JH, Nisbet AJ, Liu QY, Chen MX, Zhou DH, Zhu XQ., PLoS One 7(12), 2012
PMID: 23300925

miRTarBase: a database curates experimentally validated microRNA-target interactions.
Hsu SD, Lin FM, Wu WY, Liang C, Huang WC, Chan WL, Tsai WT, Chen GZ, Lee CJ, Chiu CM, Chien CH, Wu MC, Huang CY, Tsou AP, Huang HD., Nucleic Acids Res 39(database issue), 2011
PMID: 21071411

Linkage of microRNA and proteome-based profiling data sets: a perspective for the priorization of candidate biomarkers in renal cell carcinoma?
Seliger B, Jasinski S, Dressler SP, Marincola FM, Recktenwald CV, Wang E, Lichtenfels R., J Proteome Res 10(1), 2011
PMID: 21142213

Identification of a chitin-induced small RNA that regulates translation of the tfoX gene, encoding a positive regulator of natural competence in Vibrio cholerae.
Yamamoto S, Izumiya H, Mitobe J, Morita M, Arakawa E, Ohnishi M, Watanabe H., J Bacteriol 193(8), 2011
PMID: 21317321

miR-21 downregulates the tumor suppressor P12 CDK2AP1 and stimulates cell proliferation and invasion.
Zheng J, Xue H, Wang T, Jiang Y, Liu B, Li J, Liu Y, Wang W, Zhang B, Sun M., J Cell Biochem 112(3), 2011
PMID: 21328460

Target-mediated protection of endogenous microRNAs in C. elegans.
Chatterjee S, Fasler M, Büssing I, Grosshans H., Dev Cell 20(3), 2011
PMID: 21397849

Viral microRNA target allows insight into the role of translation in governing microRNA target accessibility.
Lin HR, Ganem D., Proc Natl Acad Sci U S A 108(13), 2011
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Species specific inhibition of viral replication using dicer substrate siRNAs (DsiRNAs) targeting the viral nucleoprotein of the fish pathogenic rhabdovirus viral hemorrhagic septicemia virus (VHSV).
Bohle H, Lorenzen N, Schyth BD., Antiviral Res 90(3), 2011
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The sufficient minimal set of miRNA seed types.
Ellwanger DC, Büttner FA, Mewes HW, Stümpflen V., Bioinformatics 27(10), 2011
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cDNA cloning and characterization of adipose triglyceride lipase gene in zebra finch (Taeniopygia guttata) and Java sparrow (Padda oryzivora).
Hu Y, He X, Fang M, Nie Q, Zhang X., DNA Cell Biol 30(7), 2011
PMID: 21438752

Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins.
Borchert GM, Holton NW, Williams JD, Hernan WL, Bishop IP, Dembosky JA, Elste JE, Gregoire NS, Kim JA, Koehler WW, Lengerich JC, Medema AA, Nguyen MA, Ower GD, Rarick MA, Strong BN, Tardi NJ, Tasker NM, Wozniak DJ, Gatto C, Larson ED., Mob Genet Elements 1(1), 2011
PMID: 22016841

mirConnX: condition-specific mRNA-microRNA network integrator.
Huang GT, Athanassiou C, Benos PV., Nucleic Acids Res 39(web server issue), 2011
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Integrated microRNA-mRNA-analysis of human monocyte derived macrophages upon Mycobacterium avium subsp. hominissuis infection.
Sharbati J, Lewin A, Kutz-Lohroff B, Kamal E, Einspanier R, Sharbati S., PLoS One 6(5), 2011
PMID: 21629653

wapRNA: a web-based application for the processing of RNA sequences.
Zhao W, Liu W, Tian D, Tang B, Wang Y, Yu C, Li R, Ling Y, Wu J, Song S, Hu S., Bioinformatics 27(21), 2011
PMID: 21896507

A Salmonella small non-coding RNA facilitates bacterial invasion and intracellular replication by modulating the expression of virulence factors.
Gong H, Vu GP, Bai Y, Chan E, Wu R, Yang E, Liu F, Lu S., PLoS Pathog 7(9), 2011
PMID: 21949647

Next generation sequencing for profiling expression of miRNAs: technical progress and applications in drug development.
Liu J, Jennings SF, Tong W, Hong H., J Biomed Sci Eng 4(10), 2011
PMID: 22457835

Posttranscriptional regulation of the β2-subunit of cardiac L-type Ca2+ channels by MicroRNAs during long-term exposure to isoproterenol in rats.
Carrillo ED, Escobar Y, González G, Hernández A, Galindo JM, García MC, Sánchez JA., J Cardiovasc Pharmacol 58(5), 2011
PMID: 21753737

miR-183-96-182 cluster is overexpressed in prostate tissue and regulates zinc homeostasis in prostate cells.
Mihelich BL, Khramtsova EA, Arva N, Vaishnav A, Johnson DN, Giangreco AA, Martens-Uzunova E, Bagasra O, Kajdacsy-Balla A, Nonn L., J Biol Chem 286(52), 2011
PMID: 22045813

Comparative analysis of miRNAs and their targets across four plant species.
Lenz D, May P, Walther D., BMC Res Notes 4(), 2011
PMID: 22067256

miREE: miRNA recognition elements ensemble.
Reyes-Herrera PH, Ficarra E, Acquaviva A, Macii E., BMC Bioinformatics 12(), 2011
PMID: 22115078

MicroRNA and AU-rich element regulation of prostaglandin synthesis.
Moore AE, Young LE, Dixon DA., Cancer Metastasis Rev 30(3-4), 2011
PMID: 22005950

Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development.
Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K., Gene 449(1-2), 2010
PMID: 19770025

Oncofetal H19-derived miR-675 regulates tumor suppressor RB in human colorectal cancer.
Tsang WP, Ng EK, Ng SS, Jin H, Yu J, Sung JJ, Kwok TT., Carcinogenesis 31(3), 2010
PMID: 19926638

MUCIN 1 ONCOPROTEIN EXPRESSION IS SUPPRESSED BY THE miR-125b ONCOMIR.
Rajabi H, Jin C, Ahmad R, McClary C, Joshi MD, Kufe D., Genes Cancer 1(1), 2010
PMID: 20729973

Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection.
Sales G, Coppe A, Bicciato S, Bortoluzzi S, Romualdi C., Nucleic Acids Res 38(7), 2010
PMID: 20071740

Post-transcriptional regulation of alpha-synuclein expression by mir-7 and mir-153.
Doxakis E., J Biol Chem 285(17), 2010
PMID: 20106983

microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis.
Beauclair L, Yu A, Bouché N., Plant J 62(3), 2010
PMID: 20128885

Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2.
Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM., J Virol 84(9), 2010
PMID: 20181707

MicroRNAs of Bombyx mori identified by Solexa sequencing.
Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q., BMC Genomics 11(), 2010
PMID: 20199675

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.
Bonnet E, He Y, Billiau K, Van de Peer Y., Bioinformatics 26(12), 2010
PMID: 20430753

Computational methods for the identification of microRNA targets.
Dai Y, Zhou X., Open Access Bioinformatics 2(), 2010
PMID: 22162940

MicroRNA-101 negatively regulates Ezh2 and its expression is modulated by androgen receptor and HIF-1alpha/HIF-1beta.
Cao P, Deng Z, Wan M, Huang W, Cramer SD, Xu J, Lei M, Sui G., Mol Cancer 9(), 2010
PMID: 20478051

MicroRNA 125b inhibition of B cell differentiation in germinal centers.
Gururajan M, Haga CL, Das S, Leu CM, Hodson D, Josson S, Turner M, Cooper MD., Int Immunol 22(7), 2010
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Folding and finding RNA secondary structure.
Mathews DH, Moss WN, Turner DH., Cold Spring Harb Perspect Biol 2(12), 2010
PMID: 20685845

Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites.
Betel D, Koppal A, Agius P, Sander C, Leslie C., Genome Biol 11(8), 2010
PMID: 20799968

Complete characterization of the microRNAome in a patient with acute myeloid leukemia.
Ramsingh G, Koboldt DC, Trissal M, Chiappinelli KB, Wylie T, Koul S, Chang LW, Nagarajan R, Fehniger TA, Goodfellow P, Magrini V, Wilson RK, Ding L, Ley TJ, Mardis ER, Link DC., Blood 116(24), 2010
PMID: 20876853

Maternal cigarette smoking during pregnancy is associated with downregulation of miR-16, miR-21, and miR-146a in the placenta.
Maccani MA, Avissar-Whiting M, Banister CE, McGonnigal B, Padbury JF, Marsit CJ., Epigenetics 5(7), 2010
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A study of miRNAs targets prediction and experimental validation.
Huang Y, Zou Q, Song H, Song F, Wang L, Zhang G, Shen X., Protein Cell 1(11), 2010
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miR2Disease: a manually curated database for microRNA deregulation in human disease.
Jiang Q, Wang Y, Hao Y, Juan L, Teng M, Zhang X, Li M, Wang G, Liu Y., Nucleic Acids Res 37(database issue), 2009
PMID: 18927107

A regulatory interplay between miR-27a and Runx1 during megakaryopoiesis.
Ben-Ami O, Pencovich N, Lotem J, Levanon D, Groner Y., Proc Natl Acad Sci U S A 106(1), 2009
PMID: 19114653

Network Properties for Ranking Predicted miRNA Targets in Breast Cancer.
Linde J, Olsson B, Lubovac Z., Adv Bioinformatics (), 2009
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miR-198 inhibits HIV-1 gene expression and replication in monocytes and its mechanism of action appears to involve repression of cyclin T1.
Sung TL, Rice AP., PLoS Pathog 5(1), 2009
PMID: 19148268

Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information.
Joung JG, Fei Z., BMC Bioinformatics 10 Suppl 1(), 2009
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A study of microRNAs in silico and in vivo: bioinformatics approaches to microRNA discovery and target identification.
Yousef M, Showe L, Showe M., FEBS J 276(8), 2009
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MicroRNA and gene expression patterns in the differentiation of human embryonic stem cells.
Ren J, Jin P, Wang E, Marincola FM, Stroncek DF., J Transl Med 7(), 2009
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New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites.
Lee I, Ajay SS, Yook JI, Kim HS, Hong SH, Kim NH, Dhanasekaran SM, Chinnaiyan AM, Athey BD., Genome Res 19(7), 2009
PMID: 19336450

microRNA-24a is required to repress apoptosis in the developing neural retina.
Walker JC, Harland RM., Genes Dev 23(9), 2009
PMID: 19372388

Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli.
Jin Y, Watt RM, Danchin A, Huang JD., BMC Genomics 10(), 2009
PMID: 19379489

MicroRNA-155 modulates the pathogen binding ability of dendritic cells (DCs) by down-regulation of DC-specific intercellular adhesion molecule-3 grabbing non-integrin (DC-SIGN).
Martinez-Nunez RT, Louafi F, Friedmann PS, Sanchez-Elsner T., J Biol Chem 284(24), 2009
PMID: 19386588

Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana.
Alves L, Niemeier S, Hauenschild A, Rehmsmeier M, Merkle T., Nucleic Acids Res 37(12), 2009
PMID: 19417064

A functional screen implicates microRNA-138-dependent regulation of the depalmitoylation enzyme APT1 in dendritic spine morphogenesis.
Siegel G, Obernosterer G, Fiore R, Oehmen M, Bicker S, Christensen M, Khudayberdiev S, Leuschner PF, Busch CJ, Kane C, Hübel K, Dekker F, Hedberg C, Rengarajan B, Drepper C, Waldmann H, Kauppinen S, Greenberg ME, Draguhn A, Rehmsmeier M, Martinez J, Schratt GM., Nat Cell Biol 11(6), 2009
PMID: 19465924

microRNAs in CNS disorders.
Kocerha J, Kauppinen S, Wahlestedt C., Neuromolecular Med 11(3), 2009
PMID: 19536656

Micromanaging vascular biology: tiny microRNAs play big band.
Sen CK, Gordillo GM, Khanna S, Roy S., J Vasc Res 46(6), 2009
PMID: 19571573

miR-145 and miR-143 regulate smooth muscle cell fate and plasticity.
Cordes KR, Sheehy NT, White MP, Berry EC, Morton SU, Muth AN, Lee TH, Miano JM, Ivey KN, Srivastava D., Nature 460(7256), 2009
PMID: 19578358

Down-regulation of the cyclin E1 oncogene expression by microRNA-16-1 induces cell cycle arrest in human cancer cells.
Wang F, Fu XD, Zhou Y, Zhang Y., BMB Rep 42(11), 2009
PMID: 19944013

Progress in miRNA target prediction and identification.
Xia W, Cao G, Shao N., Sci China C Life Sci 52(12), 2009
PMID: 20016969

Vir-Mir db: prediction of viral microRNA candidate hairpins.
Li SC, Shiau CK, Lin WC., Nucleic Acids Res 36(database issue), 2008
PMID: 17702763

miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes.
Hsu SD, Chu CH, Tsou AP, Chen SJ, Chen HC, Hsu PW, Wong YH, Chen YH, Chen GH, Huang HD., Nucleic Acids Res 36(database issue), 2008
PMID: 18029362

snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions.
Bazeley PS, Shepelev V, Talebizadeh Z, Butler MG, Fedorova L, Filatov V, Fedorov A., Gene 408(1-2), 2008
PMID: 18160232

A scoring matrix approach to detecting miRNA target sites.
Moxon S, Moulton V, Kim JT., Algorithms Mol Biol 3(), 2008
PMID: 18377655

Posttranscriptional regulation of BK channel splice variant stability by miR-9 underlies neuroadaptation to alcohol.
Pietrzykowski AZ, Friesen RM, Martin GE, Puig SI, Nowak CL, Wynne PM, Siegelmann HT, Treistman SN., Neuron 59(2), 2008
PMID: 18667155

c-Myb is an evolutionary conserved miR-150 target and miR-150/c-Myb interaction is important for embryonic development.
Lin YC, Kuo MW, Yu J, Kuo HH, Lin RJ, Lo WL, Yu AL., Mol Biol Evol 25(10), 2008
PMID: 18667440

Let-7a microRNA suppresses therapeutics-induced cancer cell death by targeting caspase-3.
Tsang WP, Kwok TT., Apoptosis 13(10), 2008
PMID: 18758960

A SNP in a let-7 microRNA complementary site in the KRAS 3' untranslated region increases non-small cell lung cancer risk.
Chin LJ, Ratner E, Leng S, Zhai R, Nallur S, Babar I, Muller RU, Straka E, Su L, Burki EA, Crowell RE, Patel R, Kulkarni T, Homer R, Zelterman D, Kidd KK, Zhu Y, Christiani DC, Belinsky SA, Slack FJ, Weidhaas JB., Cancer Res 68(20), 2008
PMID: 18922928

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions.
Busch A, Richter AS, Backofen R., Bioinformatics 24(24), 2008
PMID: 18940824

Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication.
Ahluwalia JK, Khan SZ, Soni K, Rawat P, Gupta A, Hariharan M, Scaria V, Lalwani M, Pillai B, Mitra D, Brahmachari SK., Retrovirology 5(), 2008
PMID: 19102781

fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences.
Kin T, Yamada K, Terai G, Okida H, Yoshinari Y, Ono Y, Kojima A, Kimura Y, Komori T, Asai K., Nucleic Acids Res 35(database issue), 2007
PMID: 17099231

miRGen: a database for the study of animal microRNA genomic organization and function.
Megraw M, Sethupathy P, Corda B, Hatzigeorgiou AG., Nucleic Acids Res 35(database issue), 2007
PMID: 17108354

The impact of small RNAs. Microsymposium on small RNAs.
Obernosterer G, Meister G, Poy MN, Kuras A., EMBO Rep 8(1), 2007
PMID: 17170758

RNA interference: a tool for querying nervous system function and an emerging therapy.
Davidson BL, Boudreau RL., Neuron 53(6), 2007
PMID: 17359914

Evolutionary conservation of microRNA regulatory circuits: an examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny.
Lee CT, Risom T, Strauss WM., DNA Cell Biol 26(4), 2007
PMID: 17465887

MicroRNA in cutaneous wound healing: a new paradigm.
Shilo S, Roy S, Khanna S, Sen CK., DNA Cell Biol 26(4), 2007
PMID: 17465889

MicroRNA detection and target prediction: integration of computational and experimental approaches.
Chaudhuri K, Chatterjee R., DNA Cell Biol 26(5), 2007
PMID: 17504028

Bio-informatic trends for the determination of miRNA-target interactions in mammals.
Doran J, Strauss WM., DNA Cell Biol 26(5), 2007
PMID: 17504030

Role of miRNA in carcinogenesis and biomarker selection: a methodological view.
Ahmed FE., Expert Rev Mol Diagn 7(5), 2007
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Murine models of chronic lymphocytic leukaemia: role of microRNA-16 in the New Zealand Black mouse model.
Scaglione BJ, Salerno E, Balan M, Coffman F, Landgraf P, Abbasi F, Kotenko S, Marti GE, Raveche ES., Br J Haematol 139(5), 2007
PMID: 17941951

A human cytomegalovirus-encoded microRNA regulates expression of multiple viral genes involved in replication.
Grey F, Meyers H, White EA, Spector DH, Nelson J., PLoS Pathog 3(11), 2007
PMID: 17983268

A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory.
Fox JA, McMillan S, Ouellette BF., Nucleic Acids Res 34(web server issue), 2006
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