PUB - Publikationen an der Universität Bielefeld

Human clade B serpins (ov-serpins) belong to a cohort of evolutionarily dispersed intracellular proteinase inhibitor clades that protect cells from promiscuous proteolysis.
Silverman GA, Whisstock JC, Askew DJ, Pak SC, Luke CJ, Cataltepe S, Irving JA, Bird PI., Cell. Mol. Life Sci. 61(3), 2004
PMID: 14770295

The role of serpins in the surveillance of the secretory pathway.
Ragg H., Cell. Mol. Life Sci. 64(21), 2007
PMID: 17668148

Serpins in unicellular Eukarya, Archaea, and Bacteria: sequence analysis and evolution.
Roberts TH, Hejgaard J, Saunders NF, Cavicchioli R, Curmi PM., J. Mol. Evol. 59(4), 2004
PMID: 15638455

Complete antithrombin deficiency in mice results in embryonic lethality.
Ishiguro K, Kojima T, Kadomatsu K, Nakayama Y, Takagi A, Suzuki M, Takeda N, Ito M, Yamamoto K, Matsushita T, Kusugami K, Muramatsu T, Saito H., J. Clin. Invest. 106(7), 2000
PMID: 11018075

Serpinopathies and the conformational dementias.
Lomas DA, Carrell RW., Nat. Rev. Genet. 3(10), 2002
PMID: 12360234

Neuroserpin: a serpin to think about.
Miranda E, Lomas DA., Cell. Mol. Life Sci. 63(6), 2006
PMID: 16465451

Neuroserpin, a brain-associated inhibitor of tissue plasminogen activator is localized primarily in neurons. Implications for the regulation of motor learning and neuronal survival.
Hastings GA, Coleman TA, Haudenschild CC, Stefansson S, Smith EP, Barthlow R, Cherry S, Sandkvist M, Lawrence DA., J. Biol. Chem. 272(52), 1997
PMID: 9407089

The axonally secreted serine proteinase inhibitor, neuroserpin, inhibits plasminogen activators and plasmin but not thrombin.
Osterwalder T, Cinelli P, Baici A, Pennella A, Krueger SR, Schrimpf SP, Meins M, Sonderegger P., J. Biol. Chem. 273(4), 1998
PMID: 9442076

Neuroserpin regulates neurite outgrowth in nerve growth factor-treated PC12 cells.
Parmar PK, Coates LC, Pearson JF, Hill RM, Birch NP., J. Neurochem. 82(6), 2002
PMID: 12354288

Identification of a novel targeting sequence for regulated secretion in the serine protease inhibitor neuroserpin.
Ishigami S, Sandkvist M, Tsui F, Moore E, Coleman TA, Lawrence DA., Biochem. J. 402(1), 2007
PMID: 17040209

Widespread occurrence of serpin genes with multiple reactive centre-containing exon cassettes in insects and nematodes.
Kruger O, Ladewig J, Koster K, Ragg H., Gene 293(1-2), 2002
PMID: 12137947

Inhibition of furin by serpin Spn4A from Drosophila melanogaster.
Oley M, Letzel MC, Ragg H., FEBS Lett. 577(1-2), 2004
PMID: 15527779

Drosophila serpin 4 functions as a neuroserpin-like inhibitor of subtilisin-like proprotein convertases.
Osterwalder T, Kuhnen A, Leiserson WM, Kim YS, Keshishian H., J. Neurosci. 24(24), 2004
PMID: 15201320

The Spn4 gene of Drosophila encodes a potent furin-directed secretory pathway serpin.
Richer MJ, Keays CA, Waterhouse J, Minhas J, Hashimoto C, Jean F., Proc. Natl. Acad. Sci. U.S.A. 101(29), 2004
PMID: 15247425

Evolution and classification of the serpin superfamily
AUTHOR UNKNOWN, 2007

The murine alpha(1)-proteinase inhibitor gene family: polymorphism, chromosomal location, and structure.
Barbour KW, Wei F, Brannan C, Flotte TR, Baumann H, Berger FG., Genomics 80(5), 2002
PMID: 12408969

A review and comparison of the murine alpha1-antitrypsin and alpha1-antichymotrypsin multigene clusters with the human clade A serpins.
Forsyth S, Horvath A, Coughlin P., Genomics 81(3), 2003
PMID: 12659817

Functional diversification of a protease inhibitor gene in the genus Drosophila and its molecular basis.
Borner S, Ragg H., Gene 415(1-2), 2008
PMID: 18395367

Vertebrate serpins: construction of a conflict-free phylogeny by combining exon-intron and diagnostic site analyses.
Ragg H, Lokot T, Kamp PB, Atchley WR, Dress A., Mol. Biol. Evol. 18(4), 2001
PMID: 11264410

Phylogenetic analyses of amino acid variation in the serpin proteins.
Atchley WR, Lokot T, Wollenberg K, Dress A, Ragg H., Mol. Biol. Evol. 18(8), 2001
PMID: 11470841

The ovalbumin serpins revisited: perspective from the chicken genome of clade B serpin evolution in vertebrates.
Benarafa C, Remold-O'Donnell E., Proc. Natl. Acad. Sci. U.S.A. 102(32), 2005
PMID: 16055559

Analysis of vertebrate genomes suggests a new model for clade B serpin evolution.
Kaiserman D, Bird PI., BMC Genomics 6(), 2005
PMID: 16305753

An original SERPINA3 gene cluster: elucidation of genomic organization and gene expression in the Bos taurus 21q24 region.
Pelissier P, Delourme D, Germot A, Blanchet X, Becila S, Maftah A, Leveziel H, Ouali A, Bremaud L., BMC Genomics 9(), 2008
PMID: 18384666

CCM3 interacts with CCM2 indicating common pathogenesis for cerebral cavernous malformations.
Voss K, Stahl S, Schleider E, Ullrich S, Nickel J, Mueller TD, Felbor U., Neurogenetics 8(4), 2007
PMID: 17657516

Mutations within the programmed cell death 10 gene cause cerebral cavernous malformations.
Bergametti F, Denier C, Labauge P, Arnoult M, Boetto S, Clanet M, Coubes P, Echenne B, Ibrahim R, Irthum B, Jacquet G, Lonjon M, Moreau JJ, Neau JP, Parker F, Tremoulet M, Tournier-Lasserve E; Societe Francaise de Neurochirurgie., Am. J. Hum. Genet. 76(1), 2004
PMID: 15543491

Lumenal endosomal and Golgi-retrieval determinants involved in pH-sensitive targeting of an early Golgi protein.
Bachert C, Lee TH, Linstedt AD., Mol. Biol. Cell 12(10), 2001
PMID: 11598199

A cycling cis-Golgi protein mediates endosome-to-Golgi traffic.
Natarajan R, Linstedt AD., Mol. Biol. Cell 15(11), 2004
PMID: 15331763

Both post-Golgi and intra-Golgi cycling affect the distribution of the Golgi phosphoprotein GPP130.
Starr T, Forsten-Williams K, Storrie B., Traffic 8(9), 2007
PMID: 17605763

A proprotein convertase-inhibiting serpin with an endoplasmic reticulum targeting signal from Branchiostoma lanceolatum, a close relative of vertebrates.
Bentele C, Kruger O, Todtmann U, Oley M, Ragg H., Biochem. J. 395(3), 2006
PMID: 16445382

A molecular specificity code for the three mammalian KDEL receptors.
Raykhel I, Alanen H, Salo K, Jurvansuu J, Nguyen VD, Latva-Ranta M, Ruddock L., J. Cell Biol. 179(6), 2007
PMID: 18086916

Genomic clocks and evolutionary timescales.
Blair Hedges S, Kumar S., Trends Genet. 19(4), 2003
PMID: 12683973

Written in stone: fossils, genes and evo-devo.
Raff RA., Nat. Rev. Genet. 8(12), 2007
PMID: 18007648

Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, Finnerty JR, Technau U, Martindale MQ, Rokhsar DS., Science 317(5834), 2007
PMID: 17615350

Two non-homologous brain diseases-related genes, SERPINI1 and PDCD10, are tightly linked by an asymmetric bidirectional promoter in an evolutionarily conserved manner.
Chen PY, Chang WS, Chou RH, Lai YK, Lin SC, Chi CY, Wu CW., BMC Mol. Biol. 8(), 2007
PMID: 17212813

Conserved Ser residues, the shutter region, and speciation in serpin evolution.
Krem MM, Di Cera E., J. Biol. Chem. 278(39), 2003
PMID: 12847097

Cloning and characterization of four Anopheles gambiae serpin isoforms, differentially induced in the midgut by Plasmodium berghei invasion.
Danielli A, Kafatos FC, Loukeris TG., J. Biol. Chem. 278(6), 2002
PMID: 12456678

Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii.
Raible F, Tessmar-Raible K, Osoegawa K, Wincker P, Jubin C, Balavoine G, Ferrier D, Benes V, de Jong P, Weissenbach J, Bork P, Arendt D., Science 310(5752), 2005
PMID: 16311335

Modern origin of numerous alternatively spliced human introns from tandem arrays.
Zhuo D, Madden R, Elela SA, Chabot B., Proc. Natl. Acad. Sci. U.S.A. 104(3), 2007
PMID: 17210920

Prevalence of intron gain over intron loss in the evolution of paralogous gene families.
Babenko VN, Rogozin IB, Mekhedov SL, Koonin EV., Nucleic Acids Res. 32(12), 2004
PMID: 15254274

Database resources of the National Center for Biotechnology Information.
Wheeler DL, Church DM, Lash AE, Leipe DD, Madden TL, Pontius JU, Schuler GD, Schriml LM, Tatusova TA, Wagner L, Rapp BA., Nucleic Acids Res. 29(1), 2001
PMID: 11125038

Ensembl 2007.
Hubbard TJ, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Herrero J, Holland R, Howe K, Howe K, Johnson N, Kahari A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Melsopp C, Megy K, Meidl P, Ouverdin B, Parker A, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Severin J, Slater G, Smedley D, Spudich G, Trevanion S, Vilella A, Vogel J, White S, Wood M, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Flicek P, Kasprzyk A, Proctor G, Searle S, Smith J, Ureta-Vidal A, Birney E., Nucleic Acids Res. 35(Database issue), 2006
PMID: 17148474

Xenbase: a Xenopus biology and genomics resource.
Bowes JB, Snyder KA, Segerdell E, Gibb R, Jarabek C, Noumen E, Pollet N, Vize PD., Nucleic Acids Res. 36(Database issue), 2007
PMID: 17984085

Tetraodon genome browser at the French National Sequencing Center – Genoscope
AUTHOR UNKNOWN, 0

The UCSC Genome Browser Database: 2008 update.
Karolchik D, Kuhn RM, Baertsch R, Barber GP, Clawson H, Diekhans M, Giardine B, Harte RA, Hinrichs AS, Hsu F, Kober KM, Miller W, Pedersen JS, Pohl A, Raney BJ, Rhead B, Rosenbloom KR, Smith KE, Stanke M, Thakkapallayil A, Trumbower H, Wang T, Zweig AS, Haussler D, Kent WJ., Nucleic Acids Res. 36(Database issue), 2007
PMID: 18086701

The genome of the sea urchin Strongylocentrotus purpuratus.
Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Belle R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Geneviere AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallbook F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Rottinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science 314(5801), 2006
PMID: 17095691

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG., Nucleic Acids Res. 25(24), 1997
PMID: 9396791

GeneDoc: analysis and visualization of genetic variation
AUTHOR UNKNOWN, 1997

GeneWise and Genomewise.
Birney E, Clamp M, Durbin R., Genome Res. 14(5), 2004
PMID: 15123596