PUB - Publikationen an der Universität Bielefeld

Kasugamycin and kasugamycin-fungicide mixtures for managing bacterial spot of tomato
AUTHOR UNKNOWN, 2012

Management of Leaf Spot/Blight of Heliconia Caused by [Drechslera State of Trichometasphaeria holmii] Using Fungicides
AUTHOR UNKNOWN, 2012

Re-discovery of kasugamycin for managing fire blight and other bacterial diseases of plants in the United States
AUTHOR UNKNOWN, 2010

Comparison of Kasugamycin to traditional bactericides for the management of bacterial spot on tomato
AUTHOR UNKNOWN, 2010

[Clinical use of Kasugamycin for urinary tract infections due to Pseudomonas aeruginosa].
Ishigami J, Fukuda Y, Hara S., J Antibiot B 20(2), 1967
PMID: 5299159

The binding of kasugamycin to the Escherichia coli ribosomes.
Okuyama A, Tanaka N, Komai T., J. Antibiot. 28(11), 1975
PMID: 1104550

The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation.
Schluenzen F, Takemoto C, Wilson DN, Kaminishi T, Harms JM, Hanawa-Suetsugu K, Szaflarski W, Kawazoe M, Shirouzu M, Shirouzo M, Nierhaus KH, Yokoyama S, Fucini P., Nat. Struct. Mol. Biol. 13(10), 2006
PMID: 16998488

Structural analysis of kasugamycin inhibition of translation.
Schuwirth BS, Day JM, Hau CW, Janssen GR, Dahlberg AE, Cate JH, Vila-Sanjurjo A., Nat. Struct. Mol. Biol. 13(10), 2006
PMID: 16998486

Differential inhibition of 30S and 70S translation initiation complexes on leaderless mRNA by kasugamycin.
Moll I, Blasi U., Biochem. Biophys. Res. Commun. 297(4), 2002
PMID: 12359258

Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs.
Moll I, Hirokawa G, Kiel MC, Kaji A, Blasi U., Nucleic Acids Res. 32(11), 2004
PMID: 15215335

Proximity of the start codon to a leaderless mRNA's 5' terminus is a strong positive determinant of ribosome binding and expression in Escherichia coli.
Krishnan KM, Van Etten WJ 3rd, Janssen GR., J. Bacteriol. 192(24), 2010
PMID: 20971908

Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq).
Babski J, Haas KA, Nather-Schindler D, Pfeiffer F, Forstner KU, Hammelmann M, Hilker R, Becker A, Sharma CM, Marchfelder A, Soppa J., BMC Genomics 17(1), 2016
PMID: 27519343

A novel mechanism for translation initiation operates in haloarchaea.
Hering O, Brenneis M, Beer J, Suess B, Soppa J., Mol. Microbiol. 71(6), 2009
PMID: 19210623

A leaderless mRNA can bind to mammalian 80S ribosomes and direct polypeptide synthesis in the absence of translation initiation factors.
Andreev DE, Terenin IM, Dunaevsky YE, Dmitriev SE, Shatsky IN., Mol. Cell. Biol. 26(8), 2006
PMID: 16581790

Temperature-dependent translation of leaderless and canonical mRNAs in Escherichia coli.
Grill S, Moll I, Giuliodori AM, Gualerzi CO, Blasi U., FEMS Microbiol. Lett. 211(2), 2002
PMID: 12076807

Leaderless mRNAs in bacteria: surprises in ribosomal recruitment and translational control.
Moll I, Grill S, Gualerzi CO, Blasi U., Mol. Microbiol. 43(1), 2002
PMID: 11849551

Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5'-terminal AUG.
Brock JE, Pourshahian S, Giliberti J, Limbach PA, Janssen GR., RNA 14(10), 2008
PMID: 18755843

An AUG initiation codon, not codon-anticodon complementarity, is required for the translation of unleadered mRNA in Escherichia coli.
Van Etten WJ, Janssen GR., Mol. Microbiol. 27(5), 1998
PMID: 9535088

Capped mRNA with a single nucleotide leader is optimally translated in a primitive eukaryote, Giardia lamblia.
Li L, Wang CC., J. Biol. Chem. 279(15), 2004
PMID: 14722094

Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis.
Cortes T, Schubert OT, Rose G, Arnvig KB, Comas I, Aebersold R, Young DB., Cell Rep 5(4), 2013
PMID: 24268774

Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique.
Pfeifer-Sancar K, Mentz A, Ruckert C, Kalinowski J., BMC Genomics 14(), 2013
PMID: 24341750

RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti.
de Groot A, Roche D, Fernandez B, Ludanyi M, Cruveiller S, Pignol D, Vallenet D, Armengaud J, Blanchard L., Genome Biol Evol 6(4), 2014
PMID: 24723731

Analysis of SD sequences in completed microbial genomes: non-SD-led genes are as common as SD-led genes.
Chang B, Halgamuge S, Tang SL., Gene 373(), 2006
PMID: 16574344

Anatomy of Escherichia coli ribosome binding sites.
Shultzaberger RK, Bucheimer RE, Rudd KE, Schneider TD., J. Mol. Biol. 313(1), 2001
PMID: 11601857

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
AUTHOR UNKNOWN, 2006

Interfering with different steps of protein synthesis explored by transcriptional profiling of Escherichia coli K-12.
Sabina J, Dover N, Templeton LJ, Smulski DR, Soll D, LaRossa RA., J. Bacteriol. 185(20), 2003
PMID: 14526028

An unexpected type of ribosomes induced by kasugamycin: a look into ancestral times of protein synthesis?
Kaberdina AC, Szaflarski W, Nierhaus KH, Moll I., Mol. Cell 33(2), 2009
PMID: 19187763

Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli.
Mendoza-Vargas A, Olvera L, Olvera M, Grande R, Vega-Alvarado L, Taboada B, Jimenez-Jacinto V, Salgado H, Juarez K, Contreras-Moreira B, Huerta AM, Collado-Vides J, Morett E., PLoS ONE 4(10), 2009
PMID: 19838305

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.
Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J., Nucleic Acids Res. 41(Database issue), 2012
PMID: 23203884

Using microarray gene signatures to elucidate mechanisms of antibiotic action and resistance.
Brazas MD, Hancock RE., Drug Discov. Today 10(18), 2005
PMID: 16213417

The mechanism of translational coupling in Escherichia coli. Higher order structure in the atpHA mRNA acts as a conformational switch regulating the access of de novo initiating ribosomes.
Rex G, Surin B, Besse G, Schneppe B, McCarthy JE., J. Biol. Chem. 269(27), 1994
PMID: 7517937

Translational coupling varying in efficiency between different pairs of genes in the central region of the atp operon of Escherichia coli.
Hellmuth K, Rex G, Surin B, Zinck R, McCarthy JE., Mol. Microbiol. 5(4), 1991
PMID: 1830358

Translational termination-reinitiation in RNA viruses.
Powell ML., Biochem. Soc. Trans. 38(6), 2010
PMID: 21118126

Restoration of a translational stop-start overlap reinstates translational coupling in a mutant trpB'-trpA gene pair of the Escherichia coli tryptophan operon.
Das A, Yanofsky C., Nucleic Acids Res. 17(22), 1989
PMID: 2685759

Scanning model for translation reinitiation in eubacteria
AUTHOR UNKNOWN, 1990

Resistance of lambda cI translation to antibiotics that inhibit translation initiation.
Chin K, Shean CS, Gottesman ME., J. Bacteriol. 175(22), 1993
PMID: 8226693

A comparison of key aspects of gene regulation in Streptomyces coelicolor and Escherichia coli using nucleotide-resolution transcription maps produced in parallel by global and differential RNA sequencing
AUTHOR UNKNOWN, 2014

Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea.
Lange C, Zaigler A, Hammelmann M, Twellmeyer J, Raddatz G, Schuster SC, Oesterhelt D, Soppa J., BMC Genomics 8(), 2007
PMID: 17997854

Global gene expression analysis of glucose overflow metabolism in Escherichia coli and reduction of aerobic acetate formation.
Veit A, Polen T, Wendisch VF., Appl. Microbiol. Biotechnol. 74(2), 2006
PMID: 17273855

Isolation of Escherichia coli mRNA and comparison of expression using mRNA and total RNA on DNA microarrays.
Wendisch VF, Zimmer DP, Khodursky A, Peter B, Cozzarelli N, Kustu S., Anal. Biochem. 290(2), 2001
PMID: 11237321

EcoGene 3.0.
Zhou J, Rudd KE., Nucleic Acids Res. 41(Database issue), 2012
PMID: 23197660

Genome information management and integrated data analysis with HaloLex.
Pfeiffer F, Broicher A, Gillich T, Klee K, Mejia J, Rampp M, Oesterhelt D., Arch. Microbiol. 190(3), 2008
PMID: 18592220

Displaying the information contents of structural RNA alignments: the structure logos.
Gorodkin J, Heyer LJ, Brunak S, Stormo GD., Comput. Appl. Biosci. 13(6), 1997
PMID: 9475985

MEME SUITE: tools for motif discovery and searching.
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS., Nucleic Acids Res. 37(Web Server issue), 2009
PMID: 19458158