A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs.

Gräwe A, Dreyer A, Vornholt T, Barteczko U, Buchholz L, Drews G, Ho UL, Jackowski ME, Kracht M, Lüders J, Bleckwehl T, et al. (2019)
PloS one 14(3): e0210940.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Gräwe, Alexander; Dreyer, AnnaUniBi ; Vornholt, Tobias; Barteczko, UrselaUniBi; Buchholz, Luzia; Drews, Gila; Ho, Uyen Linh; Jackowski, Marta Eva; Kracht, MelissaUniBi; Lüders, JaninaUniBi; Bleckwehl, Tore; Rositzka, Lukas
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Abstract / Bemerkung
Biosensors have emerged as a valuable tool with high specificity and sensitivity for fast and reliable detection of hazardous substances in drinking water. Numerous substances have been addressed using synthetic biology approaches. However, many proposed biosensors are based on living, genetically modified organisms and are therefore limited in shelf life, usability and biosafety. We addressed these issues by the construction of an extensible, cell-free biosensor. Storage is possible through freeze drying on paper. Following the addition of an aqueous sample, a highly efficient cell-free protein synthesis (CFPS) reaction is initiated. Specific allosteric transcription factors modulate the expression of 'superfolder' green fluorescent protein (sfGFP) depending on the presence of the substance of interest. The resulting fluorescence intensities are analyzed with a conventional smartphone accompanied by simple and cheap light filters. An ordinary differential equitation (ODE) model of the biosensors was developed, which enabled prediction and optimization of performance. With an optimized cell-free biosensor based on the Shigella flexneri MerR transcriptional activator, detection of 6 mug/L Hg(II) ions in water was achieved. Furthermore, a completely new biosensor for the detection of gamma-hydroxybutyrate (GHB), a substance used as date-rape drug, was established by employing the naturally occurring transcriptional repressor BlcR from Agrobacterium tumefaciens.
Erscheinungsjahr
2019
Zeitschriftentitel
PloS one
Band
14
Ausgabe
3
Art.-Nr.
e0210940
ISSN
1932-6203
eISSN
1932-6203
Finanzierungs-Informationen
Open-Access-Publikationskosten wurden durch die Deutsche Forschungsgemeinschaft und die Universität Bielefeld gefördert.
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https://pub.uni-bielefeld.de/record/2934273

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Gräwe A, Dreyer A, Vornholt T, et al. A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs. PloS one. 2019;14(3): e0210940.
Gräwe, A., Dreyer, A., Vornholt, T., Barteczko, U., Buchholz, L., Drews, G., Ho, U. L., et al. (2019). A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs. PloS one, 14(3), e0210940. https://doi.org/10.1371/journal.pone.0210940
Gräwe, Alexander, Dreyer, Anna, Vornholt, Tobias, Barteczko, Ursela, Buchholz, Luzia, Drews, Gila, Ho, Uyen Linh, et al. 2019. “A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs.”. PloS one 14 (3): e0210940.
Gräwe, A., Dreyer, A., Vornholt, T., Barteczko, U., Buchholz, L., Drews, G., Ho, U. L., Jackowski, M. E., Kracht, M., Lüders, J., et al. (2019). A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs. PloS one 14:e0210940.
Gräwe, A., et al., 2019. A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs. PloS one, 14(3): e0210940.
A. Gräwe, et al., “A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs.”, PloS one, vol. 14, 2019, : e0210940.
Gräwe, A., Dreyer, A., Vornholt, T., Barteczko, U., Buchholz, L., Drews, G., Ho, U.L., Jackowski, M.E., Kracht, M., Lüders, J., Bleckwehl, T., Rositzka, L., Ruwe, M., Wittchen, M., Lutter, P., Müller, K., Kalinowski, J.: A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs. PloS one. 14, : e0210940 (2019).
Gräwe, Alexander, Dreyer, Anna, Vornholt, Tobias, Barteczko, Ursela, Buchholz, Luzia, Drews, Gila, Ho, Uyen Linh, Jackowski, Marta Eva, Kracht, Melissa, Lüders, Janina, Bleckwehl, Tore, Rositzka, Lukas, Ruwe, Matthias, Wittchen, Manuel, Lutter, Petra, Müller, Kristian, and Kalinowski, Jörn. “A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs.”. PloS one 14.3 (2019): e0210940.
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59 References

Daten bereitgestellt von Europe PubMed Central.


AUTHOR UNKNOWN, 2011
Human exposure and health effects of inorganic and elemental mercury.
Park JD, Zheng W., J Prev Med Public Health 45(6), 2012
PMID: 23230464

AUTHOR UNKNOWN, 1995
Biosensors: sense and sensibility.
Turner AP., Chem Soc Rev 42(8), 2013
PMID: 23420144
Advances in arsenic biosensor development--a comprehensive review.
Kaur H, Kumar R, Babu JN, Mittal S., Biosens Bioelectron 63(), 2014
PMID: 25150780
The MerR family of transcriptional regulators.
Brown NL, Stoyanov JV, Kidd SP, Hobman JL., FEMS Microbiol. Rev. 27(2-3), 2003
PMID: 12829265
Screening and confirmation methods for GHB determination in biological fluids.
Ingels AS, Wille SM, Samyn N, Lambert WE, Stove CP., Anal Bioanal Chem 406(15), 2014
PMID: 24500753
The Agrobacterium tumefaciens transcription factor BlcR is regulated via oligomerization.
Pan Y, Fiscus V, Meng W, Zheng Z, Zhang LH, Fuqua C, Chen L., J. Biol. Chem. 286(23), 2011
PMID: 21467043

AUTHOR UNKNOWN, 2003
Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components.
Pardee K, Green AA, Takahashi MK, Braff D, Lambert G, Lee JW, Ferrante T, Ma D, Donghia N, Fan M, Daringer NM, Bosch I, Dudley DM, O'Connor DH, Gehrke L, Collins JJ., Cell 165(5), 2016
PMID: 27160350
Paper-based synthetic gene networks.
Pardee K, Green AA, Ferrante T, Cameron DE, DaleyKeyser A, Yin P, Collins JJ., Cell 159(4), 2014
PMID: 25417167
Development of a paper-based analytical device for colorimetric detection of select foodborne pathogens.
Jokerst JC, Adkins JA, Bisha B, Mentele MM, Goodridge LD, Henry CS., Anal. Chem. 84(6), 2012
PMID: 22320200
Characterization of co-translationally formed nanodisc complexes with small multidrug transporters, proteorhodopsin and with the E. coli MraY translocase.
Roos C, Zocher M, Muller D, Munch D, Schneider T, Sahl HG, Scholz F, Wachtveitl J, Ma Y, Proverbio D, Henrich E, Dotsch V, Bernhard F., Biochim. Biophys. Acta 1818(12), 2012
PMID: 22960287
Cotranslational incorporation of non-standard amino acids using cell-free protein synthesis.
Quast RB, Mrusek D, Hoffmeister C, Sonnabend A, Kubick S., FEBS Lett. 589(15), 2015
PMID: 25937125
PURE technology.
Shimizu Y, Ueda T., Methods Mol. Biol. 607(), 2010
PMID: 20204844
A Simple Protein Synthesis Model for the PURE System Operation.
Mavelli F, Marangoni R, Stano P., Bull. Math. Biol. 77(6), 2015
PMID: 25911591
Experiment and mathematical modeling of gene expression dynamics in a cell-free system.
Stogbauer T, Windhager L, Zimmer R, Radler JO., Integr Biol (Camb) 4(5), 2012
PMID: 22481223
Engineering and characterization of a superfolder green fluorescent protein.
Pedelacq JD, Cabantous S, Tran T, Terwilliger TC, Waldo GS., Nat. Biotechnol. 24(1), 2005
PMID: 16369541

AUTHOR UNKNOWN, 2014

AUTHOR UNKNOWN, 0
Teh Li Yen, Jamalipour A. Lab-in-a-Phone. Smartphone-Based Portable Fluorometer for pH Measurements of Environmental Water
AUTHOR UNKNOWN, 2015
Enzymatic assembly of DNA molecules up to several hundred kilobases.
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA 3rd, Smith HO., Nat. Methods 6(5), 2009
PMID: 19363495
Translation enhancer improves the ribosome liberation from translation initiation.
Takahashi S, Furusawa H, Ueda T, Okahata Y., J. Am. Chem. Soc. 135(35), 2013
PMID: 23927491
Expression optimization and synthetic gene networks in cell-free systems.
Karig DK, Iyer S, Simpson ML, Doktycz MJ., Nucleic Acids Res. 40(8), 2011
PMID: 22180537
Fluorescent proteins and in vitro genetic organization for cell-free synthetic biology.
Lentini R, Forlin M, Martini L, Del Bianco C, Spencer AC, Torino D, Mansy SS., ACS Synth Biol 2(9), 2013
PMID: 23654270

AUTHOR UNKNOWN, 2011
The MerE protein encoded by transposon Tn21 is a broad mercury transporter in Escherichia coli.
Kiyono M, Sone Y, Nakamura R, Pan-Hou H, Sakabe K., FEBS Lett. 583(7), 2009
PMID: 19265693

AUTHOR UNKNOWN, 2003
The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome.
Gorna MW, Pietras Z, Tsai YC, Callaghan AJ, Hernandez H, Robinson CV, Luisi BF., RNA 16(3), 2010
PMID: 20106955
Protocols for implementing an Escherichia coli based TX-TL cell-free expression system for synthetic biology.
Sun ZZ, Hayes CA, Shin J, Caschera F, Murray RM, Noireaux V., J Vis Exp (79), 2013
PMID: 24084388

AUTHOR UNKNOWN, 0
A novel sequence element derived from bacteriophage T7 mRNA acts as an enhancer of translation of the lacZ gene in Escherichia coli
AUTHOR UNKNOWN, 1989
Coarse-grained dynamics of protein synthesis in a cell-free system.
Karzbrun E, Shin J, Bar-Ziv RH, Noireaux V., Phys. Rev. Lett. 106(4), 2011
PMID: 21405367
Prolonging cell-free protein synthesis with a novel ATP regeneration system.
Kim DM, Swartz JR., Biotechnol. Bioeng. 66(3), 1999
PMID: 10577472
A highly efficient and economical cell-free protein synthesis system using the S12 extract of Escherichia coli
AUTHOR UNKNOWN, 2008
Comparison of deterministic and stochastic models of the lac operon genetic network.
Stamatakis M, Mantzaris NV., Biophys. J. 96(3), 2009
PMID: 19186128
Synthetic biology devices for in vitro and in vivo diagnostics.
Slomovic S, Pardee K, Collins JJ., Proc. Natl. Acad. Sci. U.S.A. 112(47), 2015
PMID: 26598662

AUTHOR UNKNOWN, 0
Characterizing and prototyping genetic networks with cell-free transcription-translation reactions.
Takahashi MK, Hayes CA, Chappell J, Sun ZZ, Murray RM, Noireaux V, Lucks JB., Methods 86(), 2015
PMID: 26022922
Cell-free platforms for flexible expression and screening of enzymes.
Catherine C, Lee KH, Oh SJ, Kim DM., Biotechnol. Adv. 31(6), 2013
PMID: 23648628
Development of a Specific and Sensitive Bacteria Sensor for Detection of Mercury at Picomolar Levels in Environment
AUTHOR UNKNOWN, 2004
A Luminescence-Based Mercury Biosensor
AUTHOR UNKNOWN, 1995
Creating a completely "cell-free" system for protein synthesis.
Smith MT, Bennett AM, Hunt JM, Bundy BC., Biotechnol. Prog. 31(6), 2015
PMID: 26289032
Engineering an allosteric transcription factor to respond to new ligands.
Taylor ND, Garruss AS, Moretti R, Chan S, Arbing MA, Cascio D, Rogers JK, Isaacs FJ, Kosuri S, Baker D, Fields S, Church GM, Raman S., Nat. Methods 13(2), 2015
PMID: 26689263
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