@article{Waltemath2016-10Towar-34863,
  year={2016},
  doi={10.1109/TBME.2016.2560762},
  title={Toward community standards and software for whole-cell modeling},
  number={10},
  volume={63},
  issn={0018-9294},
  journal={IEEE Transactions on Biomedical Engineering},
  pages={2007--2014},
  author={Waltemath, Dagmar and Karr, Jonathan and Bergmann, Frank and Chelliah, Vijayalakshmi and Hucka, Michael and Krantz, Marcus and Liebermeister, Wolfram and Mendes, Pedro and Zardilis, Argyris and Schreiber, Falk}
}

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    <dc:creator>Karr, Jonathan</dc:creator>
    <dc:contributor>Karr, Jonathan</dc:contributor>
    <dc:creator>Zardilis, Argyris</dc:creator>
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    <dcterms:abstract xml:lang="eng">Whole-cell (WC) modeling is a promising tool for biological research, bioengineering, and medicine. However, substantial work remains to create accurate, comprehensive models of complex cells.Whole-cell (WC) modeling is a promising tool for biological research, bioengineering, and medicine. However, substantial work remains to create accurate, comprehensive models of complex cells. Methods: We organized the 2015 Whole-Cell Modeling Summer School to teach WC modeling and evaluate the need for new WC modeling standards and software by recoding a recently published WC model in SBML. Results: Our analysis revealed several challenges to representing WC models using the current standards. Conclusion: We, therefore, propose several new WC modeling standards, software, and databases. Significance:We anticipate that these new standards and software will enable more comprehensive models.</dcterms:abstract>
    <dc:creator>Waltemath, Dagmar</dc:creator>
    <dc:contributor>Zardilis, Argyris</dc:contributor>
    <dc:creator>Hucka, Michael</dc:creator>
    <dc:creator>Krantz, Marcus</dc:creator>
    <dc:contributor>Mendes, Pedro</dc:contributor>
    <dc:contributor>Liebermeister, Wolfram</dc:contributor>
    <dc:creator>Chelliah, Vijayalakshmi</dc:creator>
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    <dc:contributor>Chelliah, Vijayalakshmi</dc:contributor>
    <dcterms:title>Toward community standards and software for whole-cell modeling</dcterms:title>
    <dc:rights>Attribution 4.0 International</dc:rights>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2016-07-25T13:58:34Z</dc:date>
    <dc:creator>Schreiber, Falk</dc:creator>
    <dcterms:issued>2016-10</dcterms:issued>
    <dc:contributor>Bergmann, Frank</dc:contributor>
    <dc:creator>Bergmann, Frank</dc:creator>
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    <dc:contributor>Waltemath, Dagmar</dc:contributor>
    <dc:creator>Liebermeister, Wolfram</dc:creator>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/34863"/>
    <dc:contributor>Hucka, Michael</dc:contributor>
    <dc:language>eng</dc:language>
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    <dc:contributor>Krantz, Marcus</dc:contributor>
    <dc:creator>Mendes, Pedro</dc:creator>
    <dc:contributor>Schreiber, Falk</dc:contributor>
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