CIIPro: a new read-across portal to fill data gaps using public large-scale chemical and biological data

Russo, Daniel P.; Kim, Marlene T.; Wang, Wenyi; Pinolini, Daniel; Shende, Sunil; Strickland, Judy; Hartung, Thomas; Zhu, Hao

CIIPro: a new read-across portal to fill data gaps using public large-scale chemical and biological data

Dateien

Russo_0-404994.pdfGröße: 133.62 KBDownloads: 254

Datum

2016

Autor:innen

Russo, Daniel P.

Kim, Marlene T.

Wang, Wenyi

Pinolini, Daniel

Shende, Sunil

Strickland, Judy

Hartung, Thomas

Zhu, Hao

Open Access-Veröffentlichung

Open Access Green

Sammlungen

Biologie

Publikationstyp

Zeitschriftenartikel

Publikationsstatus

Published

Erschienen in

Bioinformatics. 2016, 33(3), pp. 464-466. ISSN 1367-4803. eISSN 1460-2059. Available under: doi: 10.1093/bioinformatics/btw640

Zusammenfassung

We have developed a public Chemical In vitro-In vivo Profiling (CIIPro) portal, which can automatically extract in vitro biological data from public resources (i.e. PubChem) for user-supplied compounds. For compounds with in vivo target activity data (e.g. animal toxicity testing results), the integrated cheminformatics algorithm will optimize the extracted biological data using in vitro-in vivo correlations. The resulting in vitro biological data for target compounds can be used for read-across risk assessment of target compounds. Additionally, the CIIPro portal can identify the most similar compounds based on their optimized bioprofiles. The CIIPro portal provides new powerful assessment capabilities to the scientific community and can be easily integrated with other cheminformatics tools.

Fachgebiet (DDC)

570 Biowissenschaften, Biologie

Zitieren

ISO 690

RUSSO, Daniel P., Marlene T. KIM, Wenyi WANG, Daniel PINOLINI, Sunil SHENDE, Judy STRICKLAND, Thomas HARTUNG, Hao ZHU, 2016. CIIPro: a new read-across portal to fill data gaps using public large-scale chemical and biological data. In: Bioinformatics. 2016, 33(3), pp. 464-466. ISSN 1367-4803. eISSN 1460-2059. Available under: doi: 10.1093/bioinformatics/btw640

BibTex

@article{Russo2016CIIPr-39098,
  year={2016},
  doi={10.1093/bioinformatics/btw640},
  title={CIIPro: a new read-across portal to fill data gaps using public large-scale chemical and biological data},
  number={3},
  volume={33},
  issn={1367-4803},
  journal={Bioinformatics},
  pages={464--466},
  author={Russo, Daniel P. and Kim, Marlene T. and Wang, Wenyi and Pinolini, Daniel and Shende, Sunil and Strickland, Judy and Hartung, Thomas and Zhu, Hao}
}

RDF

<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/39098">
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/28"/>
    <dc:contributor>Pinolini, Daniel</dc:contributor>
    <dc:contributor>Strickland, Judy</dc:contributor>
    <dc:creator>Hartung, Thomas</dc:creator>
    <dc:contributor>Russo, Daniel P.</dc:contributor>
    <dc:contributor>Hartung, Thomas</dc:contributor>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-06-01T08:57:50Z</dc:date>
    <dcterms:issued>2016</dcterms:issued>
    <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/39098/1/Russo_0-404994.pdf"/>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/39098"/>
    <dcterms:rights rdf:resource="https://rightsstatements.org/page/InC/1.0/"/>
    <dc:creator>Wang, Wenyi</dc:creator>
    <dc:contributor>Zhu, Hao</dc:contributor>
    <dc:creator>Strickland, Judy</dc:creator>
    <dcterms:title>CIIPro: a new read-across portal to fill data gaps using public large-scale chemical and biological data</dcterms:title>
    <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/39098/1/Russo_0-404994.pdf"/>
    <dc:rights>terms-of-use</dc:rights>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <dc:creator>Kim, Marlene T.</dc:creator>
    <dc:language>eng</dc:language>
    <dc:creator>Russo, Daniel P.</dc:creator>
    <dc:creator>Pinolini, Daniel</dc:creator>
    <dcterms:abstract xml:lang="eng">We have developed a public Chemical In vitro-In vivo Profiling (CIIPro) portal, which can automatically extract in vitro biological data from public resources (i.e. PubChem) for user-supplied compounds. For compounds with in vivo target activity data (e.g. animal toxicity testing results), the integrated cheminformatics algorithm will optimize the extracted biological data using in vitro-in vivo correlations. The resulting in vitro biological data for target compounds can be used for read-across risk assessment of target compounds. Additionally, the CIIPro portal can identify the most similar compounds based on their optimized bioprofiles. The CIIPro portal provides new powerful assessment capabilities to the scientific community and can be easily integrated with other cheminformatics tools.</dcterms:abstract>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/28"/>
    <dc:creator>Shende, Sunil</dc:creator>
    <dc:creator>Zhu, Hao</dc:creator>
    <dc:contributor>Wang, Wenyi</dc:contributor>
    <dc:contributor>Shende, Sunil</dc:contributor>
    <dc:contributor>Kim, Marlene T.</dc:contributor>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-06-01T08:57:50Z</dcterms:available>
  </rdf:Description>
</rdf:RDF>

Universitätsbibliographie

Ja