Rotenberg, Dorith, Baumann, Aaron A., Ben-Mahmoud, Sulley, Christiaens, Olivier, Dermauw, Wannes, Ioannidis, Panagiotis, Jacobs, Chris G. C., Vargas Jentzsch, Iris M., Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Taning, Clauvis N. T., Wei, Dong, Widana Gamage, Shirani M. K., Hughes, Daniel S. T., Murali, Shwetha C., Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simao, Felipe A., Dietzgen, Ralf G., Chao, Hsu, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Qu, Jiaxin, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Park, Yoonseong, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., van der Zee, Maurijn, Van Leeuwen, Thomas, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A. and Richards, Stephen (2020). Genome-enabled insights into the biology of thrips as crop pests. BMC Biol., 18 (1). LONDON: BMC. ISSN 1741-7007

Full text not available from this repository.

Abstract

Background The western flower thrips,Frankliniella occidentalis(Pergande), is a globally invasive pest and plant virus vector on a wide array of food, fiber, and ornamental crops. The underlying genetic mechanisms of the processes governing thrips pest and vector biology, feeding behaviors, ecology, and insecticide resistance are largely unknown. To address this gap, we present theF. occidentalisdraft genome assembly and official gene set. Results We report on the first genome sequence for any member of the insect order Thysanoptera. Benchmarking Universal Single-Copy Ortholog (BUSCO) assessments of the genome assembly (size = 415.8 Mb, scaffold N50 = 948.9 kb) revealed a relatively complete and well-annotated assembly in comparison to other insect genomes. The genome is unusually GC-rich (50%) compared to other insect genomes to date. The official gene set (OGS v1.0) contains 16,859 genes, of which similar to 10% were manually verified and corrected by our consortium. We focused on manual annotation, phylogenetic, and expression evidence analyses for gene sets centered on primary themes in the life histories and activities of plant-colonizing insects. Highlights include the following: (1) divergent clades and large expansions in genes associated with environmental sensing (chemosensory receptors) and detoxification (CYP4, CYP6, and CCE enzymes) of substances encountered in agricultural environments; (2) a comprehensive set of salivary gland genes supported by enriched expression; (3) apparent absence of members of the IMD innate immune defense pathway; and (4) developmental- and sex-specific expression analyses of genes associated with progression from larvae to adulthood through neometaboly, a distinct form of maturation differing from either incomplete or complete metamorphosis in the Insecta. Conclusions Analysis of theF. occidentalisgenome offers insights into the polyphagous behavior of this insect pest that finds, colonizes, and survives on a widely diverse array of plants. The genomic resources presented here enable a more complete analysis of insect evolution and biology, providing a missing taxon for contemporary insect genomics-based analyses. Our study also offers a genomic benchmark for molecular and evolutionary investigations of other Thysanoptera species.

Item Type: Journal Article
Creators:
CreatorsEmailORCIDORCID Put Code
Rotenberg, DorithUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Baumann, Aaron A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Ben-Mahmoud, SulleyUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Christiaens, OlivierUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Dermauw, WannesUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Ioannidis, PanagiotisUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Jacobs, Chris G. C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Vargas Jentzsch, Iris M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Oliver, Jonathan E.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Poelchau, Monica F.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Rajarapu, Swapna PriyaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Schneweis, Derek J.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Snoeck, SimonUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Taning, Clauvis N. T.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Wei, DongUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Widana Gamage, Shirani M. K.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Hughes, Daniel S. T.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Murali, Shwetha C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Bailey, Samuel T.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Bejerman, Nicolas E.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Holmes, Christopher J.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Jennings, Emily C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Rosendale, Andrew J.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Rosselot, AndrewUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Hervey, KayleeUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Schneweis, Brandi A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Cheng, SammyUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Childers, ChristopherUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Simao, Felipe A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Dietzgen, Ralf G.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Chao, HsuUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Dinh, HuyenUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Doddapaneni, Harsha VardhanUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Dugan, ShannonUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Han, YiUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Lee, Sandra L.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Muzny, Donna M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Qu, JiaxinUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Worley, Kim C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Benoit, Joshua B.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Friedrich, MarkusUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Jones, Jeffery W.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Panfilio, Kristen A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Park, YoonseongUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Robertson, Hugh M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Smagghe, GuyUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Ullman, Diane E.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
van der Zee, MaurijnUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Van Leeuwen, ThomasUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Veenstra, Jan A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Waterhouse, Robert M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Weirauch, Matthew T.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Werren, John H.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Whitfield, Anna E.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Zdobnov, Evgeny M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Gibbs, Richard A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Richards, StephenUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
URN: urn:nbn:de:hbz:38-314698
DOI: 10.1186/s12915-020-00862-9
Journal or Publication Title: BMC Biol.
Volume: 18
Number: 1
Date: 2020
Publisher: BMC
Place of Publication: LONDON
ISSN: 1741-7007
Language: English
Faculty: Unspecified
Divisions: Unspecified
Subjects: no entry
Uncontrolled Keywords:
KeywordsLanguage
WESTERN FLOWER THRIPS; FRANKLINIELLA-OCCIDENTALIS PERGANDE; SPOTTED-WILT-VIRUS; STEROID-HORMONE INACTIVATION; IONOTROPIC GLUTAMATE RECEPTORS; HORIZONTAL GENE-TRANSFER; RED FLOUR BEETLE; JUVENILE-HORMONE; MOLECULAR EVOLUTION; PEA APHIDMultiple languages
BiologyMultiple languages
URI: http://kups.ub.uni-koeln.de/id/eprint/31469

Downloads

Downloads per month over past year

Altmetric

Export

Actions (login required)

View Item View Item