Machine Learning Approaches to Classify Anatomical Regions in Rodent Brain from High Density Recordings

  • Identifying different functional regions during a brain surgery is a challenging task usually performed by highly specialized neurophysiologists. Progress in this field may be used to improve in situ brain navigation and will serve as an important building block to minimize the number of animals in preclinical brain research required by properly positioning implants intraoperatively. The study at hand aims to correlate recorded extracellular signals with the volume of origin by deep learning methods. Our work establishes connections between the position in the brain and recorded high-density neural signals. This was achieved by evaluating the performance of BLSTM, BGRU, QRNN and CNN neural network architectures on multisite electrophysiological data sets. All networks were able to successfully distinguish cortical and thalamic brain regions according to their respective neural signals. The BGRU provides the best results with an accuracy of 88.6 % and demonstrates that this classification task might be solved in higher detail while minimizing complex preprocessing steps.

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Metadaten
Author:Anna Windbühler, Sükrü Okkesim, Olaf ChristORCiD, Soheil MottaghiORCiD, Shavika Rastogi, Michael SchmukerORCiD, Timo BaumannORCiDGND, Ulrich G. HofmannORCiD
URN:urn:nbn:de:bvb:898-opus4-35296
DOI:https://doi.org/10.1109/EMBC48229.2022.9871702
Parent Title (English):44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2022): 11-15 July 2022, Glasgow, Scotland, United Kingdom
Publisher:IEEE
Document Type:conference proceeding (article)
Language:English
Year of first Publication:2022
Publishing Institution:Ostbayerische Technische Hochschule Regensburg
Release Date:2022/04/21
First Page:3530
Last Page:3533
Institutes:Fakultät Informatik und Mathematik
Begutachtungsstatus:peer-reviewed
research focus:Digitalisierung
Licence (German):Keine Lizenz - Es gilt das deutsche Urheberrecht: § 53 UrhG