Software support for SBGN maps : SBGN-ML and LibSBGN
Dateien
Datum
Autor:innen
Herausgeber:innen
ISSN der Zeitschrift
Electronic ISSN
ISBN
Bibliografische Daten
Verlag
Schriftenreihe
Auflagebezeichnung
URI (zitierfähiger Link)
DOI (zitierfähiger Link)
Internationale Patentnummer
Link zur Lizenz
Angaben zur Forschungsförderung
Projekt
Open Access-Veröffentlichung
Sammlungen
Core Facility der Universität Konstanz
Titel in einer weiteren Sprache
Publikationstyp
Publikationsstatus
Erschienen in
Zusammenfassung
LibSBGN is a software library for reading, writing and manipulating Systems Biology Graphical Notation (SBGN) maps stored using the recently developed SBGN-ML file format. The library (available in C++ and Java) makes it easy for developers to add SBGN support to their tools, whereas the file format facilitates the exchange of maps between compatible software applications. The library also supports validation of maps, which simplifies the task of ensuring compliance with the detailed SBGN specifications. With this effort we hope to increase the adoption of SBGN in bioinformatics tools, ultimately enabling more researchers to visualize biological knowledge in a precise and unambiguous manner.
Zusammenfassung in einer weiteren Sprache
Fachgebiet (DDC)
Schlagwörter
Konferenz
Rezension
Zitieren
ISO 690
VAN IERSEL, Martijn P., Alice C. VILLEGER, Tobias CZAUDERNA, Sarah E. BOYD, Frank T. BERGMANN, Augustin LUNA, Emek DEMIR, Anatoly SOROKIN, Ugur DOGRUSOZ, Falk SCHREIBER, 2012. Software support for SBGN maps : SBGN-ML and LibSBGN. In: Bioinformatics. 2012, 28(15), pp. 2016-2021. ISSN 1367-4803. eISSN 1460-2059. Available under: doi: 10.1093/bioinformatics/bts270BibTex
@article{vanIersel2012-08-01Softw-38524, year={2012}, doi={10.1093/bioinformatics/bts270}, title={Software support for SBGN maps : SBGN-ML and LibSBGN}, number={15}, volume={28}, issn={1367-4803}, journal={Bioinformatics}, pages={2016--2021}, author={van Iersel, Martijn P. and Villeger, Alice C. and Czauderna, Tobias and Boyd, Sarah E. and Bergmann, Frank T. and Luna, Augustin and Demir, Emek and Sorokin, Anatoly and Dogrusoz, Ugur and Schreiber, Falk} }
RDF
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bibo="http://purl.org/ontology/bibo/" xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:void="http://rdfs.org/ns/void#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/38524"> <dc:rights>Attribution-NonCommercial 3.0 Unported</dc:rights> <dcterms:title>Software support for SBGN maps : SBGN-ML and LibSBGN</dcterms:title> <dc:contributor>Dogrusoz, Ugur</dc:contributor> <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/> <dc:creator>Schreiber, Falk</dc:creator> <dc:contributor>Boyd, Sarah E.</dc:contributor> <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-04-19T09:42:58Z</dc:date> <dc:creator>Villeger, Alice C.</dc:creator> <dc:creator>Luna, Augustin</dc:creator> <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/> <dc:contributor>Bergmann, Frank T.</dc:contributor> <dc:contributor>Sorokin, Anatoly</dc:contributor> <dc:creator>Czauderna, Tobias</dc:creator> <dcterms:rights rdf:resource="http://creativecommons.org/licenses/by-nc/3.0"/> <dc:contributor>Demir, Emek</dc:contributor> <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-04-19T09:42:58Z</dcterms:available> <dc:contributor>Schreiber, Falk</dc:contributor> <foaf:homepage rdf:resource="http://localhost:8080/"/> <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/> <dc:creator>van Iersel, Martijn P.</dc:creator> <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/38524/1/Van-Iersel_0-396367.pdf"/> <dc:creator>Bergmann, Frank T.</dc:creator> <dc:contributor>van Iersel, Martijn P.</dc:contributor> <dc:creator>Sorokin, Anatoly</dc:creator> <dc:language>eng</dc:language> <dc:contributor>Luna, Augustin</dc:contributor> <dcterms:issued>2012-08-01</dcterms:issued> <dc:creator>Demir, Emek</dc:creator> <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/38524"/> <dc:contributor>Czauderna, Tobias</dc:contributor> <dc:contributor>Villeger, Alice C.</dc:contributor> <dc:creator>Dogrusoz, Ugur</dc:creator> <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/38524/1/Van-Iersel_0-396367.pdf"/> <dc:creator>Boyd, Sarah E.</dc:creator> <dcterms:abstract xml:lang="eng">LibSBGN is a software library for reading, writing and manipulating Systems Biology Graphical Notation (SBGN) maps stored using the recently developed SBGN-ML file format. The library (available in C++ and Java) makes it easy for developers to add SBGN support to their tools, whereas the file format facilitates the exchange of maps between compatible software applications. The library also supports validation of maps, which simplifies the task of ensuring compliance with the detailed SBGN specifications. With this effort we hope to increase the adoption of SBGN in bioinformatics tools, ultimately enabling more researchers to visualize biological knowledge in a precise and unambiguous manner.</dcterms:abstract> </rdf:Description> </rdf:RDF>